Cba_g10418

Description : not classified & original description: none

Gene families : OG0006792 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006792_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g10418
Cluster	HCCA: Cluster_62

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00233660	evm_27.TU.AmTr_v1...	GTP-binding protein At3g49725, chloroplastic...	0.06	OrthoFinder output from all 47 species
AT5G57960	No alias	GTP-binding protein, HflX	0.04	OrthoFinder output from all 47 species
Adi_g059600	No alias	not classified & original description: none	0.1	OrthoFinder output from all 47 species
Aev_g03313	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g20881	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.34G037600.1	Ceric.34G037600	not classified & original description: pacid=50623913...	0.05	OrthoFinder output from all 47 species
Dac_g42859	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Gb_27515	No alias	component MED19 of head module of MEDIATOR transcription...	0.04	OrthoFinder output from all 47 species
LOC_Os11g38020.1	LOC_Os11g38020	GTP-binding protein At3g49725, chloroplastic...	0.06	OrthoFinder output from all 47 species
Lfl_g27465	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
MA_10437248g0010	No alias	no hits & (original description: none)	0.07	OrthoFinder output from all 47 species
Mp8g01100.1	No alias	GTP-binding protein At3g49725, chloroplastic...	0.02	OrthoFinder output from all 47 species
Msp_g06486	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g31437	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g19828	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000177	No alias	not classified & original description: CDS=27-1817	0.03	OrthoFinder output from all 47 species
Sam_g18146	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo77541	No alias	GTP-binding protein At3g49725, chloroplastic...	0.03	OrthoFinder output from all 47 species
Spa_g07834	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e021243_P003	Zm00001e021243	GTP-binding protein At3g49725, chloroplastic...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR032305	GTP-bd_M	258	335
IPR006073	GTP-bd	343	461
IPR025121	GTPase_HflX_N	167	255
IPR045498	HflX_C	474	543

External Links

No external refs found!

Cba_g10418

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation