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  5. Cba_g09085

Cba_g09085


Description : not classified & original description: none


Gene families : OG0001730 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001730_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g09085

Target Alias Description ECC score Gene Family Method Actions
AT1G53250 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.03 OrthoFinder output from all 47 species
AT1G53800 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.06 OrthoFinder output from all 47 species
Als_g17459 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20482 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g38978 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g71907 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.24G059100.1 Ceric.24G059100 not classified & original description: pacid=50628706... 0.03 OrthoFinder output from all 47 species
Dac_g20282 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01671 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g01308 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01014224001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01016660001 No alias No description available 0.04 OrthoFinder output from all 47 species
Gb_18962 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Lfl_g04002 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp6g14930.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g11885 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g48486 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g04905 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g43665 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g123700.4.1 Solyc03g123700 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g24050 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g13657 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006550_P001 Zm00001e006550 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0047429 nucleoside triphosphate diphosphatase activity IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003611 NUMOD3 130 158
No external refs found!