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  5. Sam_g49192

Sam_g49192


Description : not classified & original description: none


Gene families : OG0005577 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005577_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g49192
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00240690 evm_27.TU.AmTr_v1... Ribulose bisphosphate carboxylase/oxygenase activase,... 0.02 OrthoFinder output from all 47 species
AT1G73110 No alias P-loop containing nucleoside triphosphate hydrolases... 0.08 OrthoFinder output from all 47 species
Aev_g06596 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g06168 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g09667 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g13522 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.08G032500.1 Ceric.08G032500 not classified & original description: pacid=50638582... 0.09 OrthoFinder output from all 47 species
Dac_g14854 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g24022 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01016062001 No alias Ribulose bisphosphate carboxylase/oxygenase activase,... 0.07 OrthoFinder output from all 47 species
Gb_29248 No alias Ribulose bisphosphate carboxylase/oxygenase activase,... 0.03 OrthoFinder output from all 47 species
LOC_Os04g56320.1 LOC_Os04g56320 Ribulose bisphosphate carboxylase/oxygenase activase 2,... 0.05 OrthoFinder output from all 47 species
Len_g50097 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g02450 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g19785 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g07975 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g58392 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020487 No alias not classified & original description: CDS=305-1777 0.03 OrthoFinder output from all 47 species
Smo82367 No alias Ribulose bisphosphate carboxylase/oxygenase activase,... 0.07 OrthoFinder output from all 47 species
Solyc03g117850.4.1 Solyc03g117850 Ribulose bisphosphate carboxylase/oxygenase activase,... 0.05 OrthoFinder output from all 47 species
Tin_g21285 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005381 iron ion transmembrane transporter activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034755 iron ion transmembrane transport IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 197 339
No external refs found!