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  5. Sam_g48749

Sam_g48749


Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g48749
Cluster HCCA: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00267050 AGL6,... RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
AMTR_s00047p00190220 AGL4, SEP2,... RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
AMTR_s00089p00081270 PI,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AT2G22630 AGL17 AGAMOUS-like 17 0.03 OrthoFinder output from all 47 species
AT3G57390 AGL18 AGAMOUS-like 18 0.01 OrthoFinder output from all 47 species
AT4G11880 AGL14 AGAMOUS-like 14 0.02 OrthoFinder output from all 47 species
AT4G37940 AGL21 AGAMOUS-like 21 0.02 OrthoFinder output from all 47 species
AT5G51860 No alias K-box region and MADS-box transcription factor family protein 0.02 OrthoFinder output from all 47 species
AT5G60910 AGL8, FUL AGAMOUS-like 8 0.02 OrthoFinder output from all 47 species
Ala_g07250 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04197 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene13944.t1 AGL18, Aspi01Gene13944 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene15820.t1 SOC1, AGL20,... MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene17777.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene54037.t3 Aspi01Gene54037 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene62317.t1 ANR1, AGL44,... MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007710 AGL6 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0684.g082058 AGL21 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g06280 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g09207 AGL13 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g76647 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G004300.1 AGL10, CAL1,... not classified & original description: pacid=50627317... 0.02 OrthoFinder output from all 47 species
Ceric.08G048300.1 AGL42, Ceric.08G048300 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.08G048600.1 AGL10, CAL1,... not classified & original description: pacid=50638045... 0.02 OrthoFinder output from all 47 species
Ceric.12G052200.1 GL19, AGL19,... MADS/AGL-type transcription factor & original... 0.01 OrthoFinder output from all 47 species
Ceric.16G027500.1 AGL16, Ceric.16G027500 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.27G057900.1 STK, AGL11,... MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.37G052700.1 AGL104, Ceric.37G052700 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.38G021500.1 AGL2, SEP1,... MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.39G001800.1 AGL104, Ceric.39G001800 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000944.9 AGL15 RNA biosynthesis.transcriptional activation.MADS box... 0.01 OrthoFinder output from all 47 species
Dac_g04574 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g08553 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g20590 AGL30 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g02413 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g04461 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g15498 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25491 AGL8, FUL MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g38503 AGL42 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g51026 AGL42 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10207 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g27385 AGL21 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01000175001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01003864001 AGL16 RNA biosynthesis.transcriptional activation.MADS box... 0.01 OrthoFinder output from all 47 species
GSVIVT01008560001 SOC1, AGL20, ATSOC1 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01010221001 AGL62 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01012249001 AGL2, SEP1 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01012250001 AGL7, AP1 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01014093001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01018450001 AGL6 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
Gb_12586 AGL61, DIA transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os01g10504.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os01g66290.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os02g01355.1 SOC1, AGL20,... transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
LOC_Os02g52340.1 SVP, AGL22,... transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
LOC_Os03g54160.1 AGL7, AP1, LOC_Os03g54160 transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
LOC_Os03g54170.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
LOC_Os04g52410.2 AGL32, TT16,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os06g23980.1 AGL16, LOC_Os06g23980 MADS-box transcription factor 27 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
LOC_Os09g32948.1 AGL9, SEP3,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Len_g56389 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g25148 AGL10, CAL1, CAL not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g31128 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g38730 AGL8, FUL not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_1767g0010 AGL66 transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
MA_6544g0010 STK, AGL11 Floral homeotic protein AGAMOUS OS=Panax ginseng... 0.03 OrthoFinder output from all 47 species
MA_899014g0010 SVP, AGL22 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Msp_g09451 AGL21 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g14669 AGL30 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g21242 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g21770 AGL65 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g04651 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42895 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g42896 AGL16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44138 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25142 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g25344 AGL30 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g09107 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61246 AGL21 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009704 ANR1, AGL44 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sam_g31601 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g091550.2.1 AGL21, Solyc02g091550 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Solyc03g019710.3.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Solyc05g012020.4.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Solyc06g069430.3.1 AGL8, FUL, Solyc06g069430 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Solyc07g150138.1.1 Solyc07g150138 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc10g080030.2.1 AGL18, Solyc10g080030 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Solyc11g010570.2.1 SVP, AGL22,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Solyc12g056460.3.1 SOC1, AGL20,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Spa_g09517 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g16602 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g22852 AGL65 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g26308 AGL15 MADS/AGL-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g31312 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11248 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g23921 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g25658 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e003667_P001 AGL9, SEP3,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e005705_P004 AGL7, AP1, Zm00001e005705 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e006950_P001 AGL32, TT16,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e010125_P001 AGL9, SEP3,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e011565_P001 AGL7, AP1, Zm00001e011565 MADS-box transcription factor 15 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
Zm00001e012026_P002 AGL7, AP1, Zm00001e012026 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e013738_P001 AGL32, TT16,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e014926_P001 AGL16, Zm00001e014926 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e016529_P004 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e018811_P001 AGL14, Zm00001e018811 transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
Zm00001e018993_P001 AGL62, Zm00001e018993 transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
Zm00001e022819_P002 AGL16, Zm00001e022819 transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
Zm00001e030373_P001 AGL10, CAL1,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e031267_P003 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e032703_P001 AGL7, AP1, Zm00001e032703 transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
Zm00001e033144_P001 AGL29, Zm00001e033144 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e034629_P001 AGL9, SEP3,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Zm00001e039610_P001 AGL8, FUL, Zm00001e039610 transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
Zm00001e039774_P001 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003997 acyl-CoA oxidase activity IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006635 fatty acid beta-oxidation IEP HCCA
BP GO:0009062 fatty acid catabolic process IEP HCCA
BP GO:0016042 lipid catabolic process IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP HCCA
BP GO:0019395 fatty acid oxidation IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0034440 lipid oxidation IEP HCCA
CC GO:0042579 microbody IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044242 cellular lipid catabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0072329 monocarboxylic acid catabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 22 69
IPR002487 TF_Kbox 97 177
No external refs found!