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Description : plastidial RNA splicing factor *(HPE1) & original description: none
Gene families : OG0007581 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007581_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Sam_g40721 | |
| Cluster | HCCA: Cluster_115 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G70200 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g012143 | No alias | plastidial RNA splicing factor *(HPE1) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g01358 | No alias | plastidial RNA splicing factor *(HPE1) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g13535 | No alias | plastidial RNA splicing factor *(HPE1) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene49599.t2 | Aspi01Gene49599 | plastidial RNA splicing factor *(HPE1) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0052.g031623 | No alias | plastidial RNA splicing factor *(HPE1) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g33258 | No alias | plastidial RNA splicing factor *(HPE1) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.04G006400.1 | Ceric.04G006400 | plastidial RNA splicing factor *(HPE1) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Dcu_g11586 | No alias | plastidial RNA splicing factor *(HPE1) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g01458 | No alias | plastidial RNA splicing factor *(HPE1) & original... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01020168001 | No alias | RNA processing.organelle machineries.RNA... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os02g22070.1 | LOC_Os02g22070 | HPE1 plastidial RNA splicing factor | 0.02 | OrthoFinder output from all 47 species | |
| Mp1g21620.1 | No alias | HPE1 plastidial RNA splicing factor | 0.06 | OrthoFinder output from all 47 species | |
| Ore_g06305 | No alias | plastidial RNA splicing factor *(HPE1) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g16008 | No alias | plastidial RNA splicing factor *(HPE1) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Smo442087 | No alias | RNA processing.organelle machineries.RNA... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc05g006070.4.1 | Solyc05g006070 | HPE1 plastidial RNA splicing factor | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g30782 | No alias | plastidial RNA splicing factor *(HPE1) & original... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000287 | magnesium ion binding | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0004743 | pyruvate kinase activity | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| MF | GO:0004820 | glycine-tRNA ligase activity | IEP | HCCA |
| CC | GO:0005737 | cytoplasm | IEP | HCCA |
| BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
| BP | GO:0006090 | pyruvate metabolic process | IEP | HCCA |
| BP | GO:0006096 | glycolytic process | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006165 | nucleoside diphosphate phosphorylation | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006426 | glycyl-tRNA aminoacylation | IEP | HCCA |
| BP | GO:0006757 | ATP generation from ADP | IEP | HCCA |
| BP | GO:0009132 | nucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009135 | purine nucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009179 | purine ribonucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009185 | ribonucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0016052 | carbohydrate catabolic process | IEP | HCCA |
| MF | GO:0016209 | antioxidant activity | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
| MF | GO:0030955 | potassium ion binding | IEP | HCCA |
| MF | GO:0031072 | heat shock protein binding | IEP | HCCA |
| MF | GO:0031420 | alkali metal ion binding | IEP | HCCA |
| BP | GO:0032787 | monocarboxylic acid metabolic process | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043169 | cation binding | IEP | HCCA |
| BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
| BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
| BP | GO:0046031 | ADP metabolic process | IEP | HCCA |
| MF | GO:0046872 | metal ion binding | IEP | HCCA |
| MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
| BP | GO:0046939 | nucleotide phosphorylation | IEP | HCCA |
| MF | GO:0051082 | unfolded protein binding | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |