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  5. Sam_g37947

Sam_g37947


Description : cargo receptor protein *(PUX7/8/9/13) & original description: none


Gene families : OG0002894 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002894_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g37947

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00109170 SAY1,... Plant UBX domain-containing protein 8 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Adi_g057748 SAY1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g107306 SAY1 cargo receptor protein *(PUX7/8/9/13) & original... 0.02 OrthoFinder output from all 47 species
Aev_g06080 SAY1 cargo receptor protein *(PUX7/8/9/13) & original... 0.04 OrthoFinder output from all 47 species
Ala_g01165 SAY1 cargo receptor protein *(PUX7/8/9/13) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0075.g037627 SAY1 cargo receptor protein *(PUX7/8/9/13) & original... 0.02 OrthoFinder output from all 47 species
Gb_05634 SAY1 adaptor protein (PUX7/8/9/13) 0.03 OrthoFinder output from all 47 species
Len_g14275 SAY1 cargo receptor protein *(PUX7/8/9/13) & original... 0.02 OrthoFinder output from all 47 species
Mp1g20270.1 SAY1 adaptor protein (PUX7/8/9/13) 0.02 OrthoFinder output from all 47 species
Ore_g07140 SAY1 cargo receptor protein *(PUX7/8/9/13) & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0123.g021516 SAY1 cargo receptor protein *(PUX7/8/9/13) & original... 0.03 OrthoFinder output from all 47 species
Tin_g13519 SAY1 cargo receptor protein *(PUX7/8/9/13) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e034750_P003 SAY1, Zm00001e034750 adaptor protein (PUX7/8/9/13) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR001012 UBX_dom 543 621
No external refs found!