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  5. Sam_g37596

Sam_g37596


Description : EC_4.1 carbon-carbon lyase & original description: none


Gene families : OG0004515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004515_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g37596

Target Alias Description ECC score Gene Family Method Actions
Adi_g015098 No alias EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g086659 No alias EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0185.g056617 ASA1, TRP5,... EC_4.1 carbon-carbon lyase & original description: CDS=768-2633 0.03 OrthoFinder output from all 47 species
Pir_g49211 No alias EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006757 ASA1, TRP5,... EC_4.1 carbon-carbon lyase & original description: CDS=1-2073 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0147.g023121 ATHANSYNAB, ASA2 EC_4.1 carbon-carbon lyase & original description: CDS=1-1812 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0009058 biosynthetic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004000 adenosine deaminase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006382 adenosine to inosine editing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
BP GO:0016553 base conversion or substitution editing IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0016972 thiol oxidase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR006805 Anth_synth_I_N 62 215
IPR015890 Chorismate_C 276 548
No external refs found!