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  5. Sam_g36919

Sam_g36919


Description : not classified & original description: none


Gene families : OG0005121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005121_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g36919

Target Alias Description ECC score Gene Family Method Actions
AT5G11240 No alias transducin family protein / WD-40 repeat family protein 0.05 OrthoFinder output from all 47 species
Aop_g11203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene62302.t1 Aspi01Gene62302 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000123.23 No alias No description available 0.04 OrthoFinder output from all 47 species
Cre12.g538500 No alias No description available 0.04 OrthoFinder output from all 47 species
Ehy_g02665 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01017246001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01035079001 No alias No description available 0.04 OrthoFinder output from all 47 species
LOC_Os01g46060.1 LOC_Os01g46060 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os03g18840.1 LOC_Os03g18840 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os12g43830.1 LOC_Os12g43830 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g55550 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp5g00060.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Pir_g13559 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo404454 No alias No description available 0.04 OrthoFinder output from all 47 species
Solyc02g030080.4.1 Solyc02g030080 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc03g116380.4.1 Solyc03g116380 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Spa_g16157 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001372_P001 Zm00001e001372 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 12 33
IPR007148 SSU_processome_Utp12 480 582
No external refs found!