Sam_g36797


Description : component *(FtsH7/9) of FtsH plastidial protease complexes & original description: none


Gene families : OG0003686 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003686_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g36797
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00219050 ftsh9,... Protein degradation.peptidase families.metallopeptidase... 0.06 OrthoFinder output from all 47 species
AT5G58870 ftsh9 FTSH protease 9 0.05 OrthoFinder output from all 47 species
Als_g10828 ftsh9 component *(FtsH7/9) of FtsH plastidial protease... 0.05 OrthoFinder output from all 47 species
Als_g20596 ftsh9 component *(FtsH7/9) of FtsH plastidial protease... 0.04 OrthoFinder output from all 47 species
Aop_g10026 ftsh9 component *(FtsH7/9) of FtsH plastidial protease... 0.05 OrthoFinder output from all 47 species
Aspi01Gene13488.t1 ftsh9, Aspi01Gene13488 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene13489.t1 ftsh9, Aspi01Gene13489 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g03385 ftsh9 component *(FtsH7/9) of FtsH plastidial protease... 0.03 OrthoFinder output from all 47 species
Cba_g22498 ftsh9 component *(FtsH7/9) of FtsH plastidial protease... 0.03 OrthoFinder output from all 47 species
Ceric.35G019400.1 ftsh9, Ceric.35G019400 component *(FtsH7/9) of FtsH plastidial protease... 0.04 OrthoFinder output from all 47 species
Dcu_g24054 ftsh9 component *(FtsH7/9) of FtsH plastidial protease... 0.05 OrthoFinder output from all 47 species
Dde_g27982 ftsh9 component *(FtsH7/9) of FtsH plastidial protease... 0.07 OrthoFinder output from all 47 species
Gb_07582 ftsh9 component FtsH7|9 of FtsH plastidial protease complexes 0.07 OrthoFinder output from all 47 species
LOC_Os02g43350.1 ftsh7, LOC_Os02g43350 component FtsH7|9 of FtsH plastidial protease complexes 0.06 OrthoFinder output from all 47 species
Len_g01388 ftsh9 component *(FtsH7/9) of FtsH plastidial protease... 0.06 OrthoFinder output from all 47 species
Len_g48383 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g08529 ftsh9 component *(FtsH7/9) of FtsH plastidial protease... 0.02 OrthoFinder output from all 47 species
Lfl_g11070 ftsh9 component *(FtsH7/9) of FtsH plastidial protease... 0.02 OrthoFinder output from all 47 species
Nbi_g07114 ftsh9 component *(FtsH7/9) of FtsH plastidial protease... 0.04 OrthoFinder output from all 47 species
Ore_g36194 ftsh9 component *(FtsH7/9) of FtsH plastidial protease... 0.03 OrthoFinder output from all 47 species
Pir_g20457 ftsh9 component *(FtsH7/9) of FtsH plastidial protease... 0.05 OrthoFinder output from all 47 species
Ppi_g56490 ftsh9 component *(FtsH7/9) of FtsH plastidial protease... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0277.g027072 ftsh9 component *(FtsH7/9) of FtsH plastidial protease... 0.07 OrthoFinder output from all 47 species
Solyc06g005950.3.1 ftsh9, Solyc06g005950 component FtsH7|9 of FtsH plastidial protease complexes 0.03 OrthoFinder output from all 47 species
Spa_g12633 ftsh9 component *(FtsH7/9) of FtsH plastidial protease... 0.06 OrthoFinder output from all 47 species
Tin_g11846 ftsh9 component *(FtsH7/9) of FtsH plastidial protease... 0.02 OrthoFinder output from all 47 species
Zm00001e015276_P002 ftsh9, Zm00001e015276 component FtsH7|9 of FtsH plastidial protease complexes 0.04 OrthoFinder output from all 47 species
Zm00001e023134_P002 ftsh9, Zm00001e023134 component FtsH7|9 of FtsH plastidial protease complexes 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004176 ATP-dependent peptidase activity IEA Interproscan
MF GO:0004222 metalloendopeptidase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006508 proteolysis IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0110102 ribulose bisphosphate carboxylase complex assembly IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 575 618
IPR003959 ATPase_AAA_core 417 550
IPR000642 Peptidase_M41 635 829
No external refs found!