Sam_g36359

Description : not classified & original description: none

Gene families : OG0000193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000193_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g36359

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00164160	HSP93-V, DCA1,...	External stimuli response.temperature.Hsp...	0.03	OrthoFinder output from all 47 species
AT5G15450	CLPB3, CLPB-P, APG6	casein lytic proteinase B3	0.02	OrthoFinder output from all 47 species
AT5G50920	HSP93-V, DCA1,...	CLPC homologue 1	0.04	OrthoFinder output from all 47 species
Adi_g001206	ATHSP101, HOT1, HSP101	cytosolic chaperone *(Hsp101) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g010878	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g055207	SAG15, CLPD, ERD1	chaperone component *(ClpD) of chloroplast Clp-type...	0.02	OrthoFinder output from all 47 species
Aev_g05486	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.02	OrthoFinder output from all 47 species
Aev_g28850	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Aspi01Gene41223.t1	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.05	OrthoFinder output from all 47 species
Ceric.07G005700.1	CLPB3, CLPB-P,...	organellar chaperone *(Clp-p/Clp-m) & original...	0.03	OrthoFinder output from all 47 species
Ceric.15G073100.1	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.04	OrthoFinder output from all 47 species
Cre02.g143307	No alias	No description available	0.01	OrthoFinder output from all 47 species
Cre43.g760497	HSP93-V, DCA1,...	Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Dac_g04714	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Dac_g23824	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.02	OrthoFinder output from all 47 species
Dcu_g14360	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Dde_g24879	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
LOC_Os12g12850.1	HSP93-V, DCA1,...	chaperone component ClpC of chloroplast Clp-type protease complex	0.03	OrthoFinder output from all 47 species
Len_g14887	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Len_g32317	CLPB3, CLPB-P, APG6	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g04908	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Lfl_g07411	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.06	OrthoFinder output from all 47 species
MA_1160713g0010	HSP93-V, DCA1,...	ATP-dependent Clp protease ATP-binding subunit ClpA...	0.03	OrthoFinder output from all 47 species
MA_596288g0010	HSP93-V, DCA1,...	Chaperone protein ClpC1, chloroplastic OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
MA_8117g0010	HSP93-V, DCA1,...	ATP-dependent Clp protease ATP-binding subunit ClpA...	0.03	OrthoFinder output from all 47 species
MA_8475g0010	ATHSP101, HOT1, HSP101	Chaperone protein ClpB1 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Mp1g02560.1	HSP93-V, DCA1,...	chaperone component ClpC of chloroplast Clp-type protease complex	0.02	OrthoFinder output from all 47 species
Msp_g23938	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.05	OrthoFinder output from all 47 species
Msp_g48913	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g27541	HSP93-V, DCA1,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g29985	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.06	OrthoFinder output from all 47 species
Pir_g31360	ATHSP101, HOT1, HSP101	cytosolic chaperone *(Hsp101) & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g03943	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009060	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original...	0.03	OrthoFinder output from all 47 species
Sam_g14950	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g17391	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g26958	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc02g088610.4.1	CLPB3, CLPB-P,...	organellar chaperone (Clp-p\|Clp-m)	0.03	OrthoFinder output from all 47 species
Tin_g10041	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e008256_P006	SAG15, CLPD,...	chaperone component ClpD of chloroplast Clp-type protease complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
CC	GO:0005778	peroxisomal membrane	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0016559	peroxisome fission	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0031903	microbody membrane	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
CC	GO:0042579	microbody	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0048285	organelle fission	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR041546	ClpA/ClpB_AAA_lid	42	143
IPR003959	ATPase_AAA_core	299	467

External Links

No external refs found!

Sam_g36359

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation