1. Home
  2. Species
  3. Salvinia molesta
  4. Sequence
  5. Sam_g29691

Sam_g29691


Description : component *(RBM26) of PAXT nucleoplasmic activation complex & original description: none


Gene families : OG0001970 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001970_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29691
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AT3G27700 No alias zinc finger (CCCH-type) family protein / RNA recognition... 0.03 OrthoFinder output from all 47 species
Adi_g055514 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g055515 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g055516 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.02 OrthoFinder output from all 47 species
Ala_g37119 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.02 OrthoFinder output from all 47 species
Als_g15540 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.07 OrthoFinder output from all 47 species
Aop_g10904 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.02 OrthoFinder output from all 47 species
Ceric.14G069200.1 Ceric.14G069200 component *(RBM26) of PAXT nucleoplasmic activation... 0.04 OrthoFinder output from all 47 species
Dac_g08763 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.02 OrthoFinder output from all 47 species
Dcu_g07772 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.04 OrthoFinder output from all 47 species
Ehy_g29853 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.04 OrthoFinder output from all 47 species
GSVIVT01032423001 No alias Zinc finger CCCH domain-containing protein 41... 0.04 OrthoFinder output from all 47 species
Gb_08836 No alias Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.06 OrthoFinder output from all 47 species
Gb_29092 No alias Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.04 OrthoFinder output from all 47 species
Len_g24725 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.02 OrthoFinder output from all 47 species
Lfl_g10579 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
MA_33944g0010 No alias Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Mp5g00230.1 No alias Zinc finger CCCH domain-containing protein 41... 0.03 OrthoFinder output from all 47 species
Ore_g15250 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.02 OrthoFinder output from all 47 species
Ore_g27253 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Smo437689 No alias Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Solyc02g086510.4.1 Solyc02g086510 Zinc finger CCCH domain-containing protein 41... 0.02 OrthoFinder output from all 47 species
Tin_g11114 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004484 mRNA guanylyltransferase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
BP GO:0005986 sucrose biosynthetic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006361 transcription initiation at RNA polymerase I promoter IEP HCCA
BP GO:0006370 7-methylguanosine mRNA capping IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008192 RNA guanylyltransferase activity IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0019203 carbohydrate phosphatase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050307 sucrose-phosphate phosphatase activity IEP HCCA
MF GO:0050308 sugar-phosphatase activity IEP HCCA
MF GO:0070568 guanylyltransferase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140223 general transcription initiation factor activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002483 PWI_dom 107 168
IPR000504 RRM_dom 702 765
No external refs found!