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  5. Sam_g29289

Sam_g29289


Description : scaffold component *(FRY) of RAM signalling pathway & original description: none


Gene families : OG0004160 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004160_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29289

Target Alias Description ECC score Gene Family Method Actions
AT5G15680 No alias ARM repeat superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g059761 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.03 OrthoFinder output from all 47 species
Aev_g35197 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03907 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.02 OrthoFinder output from all 47 species
Aop_g01850 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.02 OrthoFinder output from all 47 species
Cba_g02118 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.03 OrthoFinder output from all 47 species
Ceric.1Z029100.1 Ceric.1Z029100 scaffold component *(FRY) of RAM signalling pathway &... 0.03 OrthoFinder output from all 47 species
Cre17.g703750 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g04159 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.03 OrthoFinder output from all 47 species
Dde_g12439 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.02 OrthoFinder output from all 47 species
Gb_24208 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os02g58410.1 LOC_Os02g58410 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_10435894g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_10436406g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g14653 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.04 OrthoFinder output from all 47 species
Ore_g25800 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.04 OrthoFinder output from all 47 species
Solyc02g089370.2.1 Solyc02g089370 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004000 adenosine deaminase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006382 adenosine to inosine editing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008962 phosphatidylglycerophosphatase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
BP GO:0016553 base conversion or substitution editing IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
CC GO:0030906 retromer, cargo-selective complex IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR029473 MOR2-PAG1_mid 679 1790
IPR025614 Cell_morpho_N 94 640
IPR025481 Cell_Morphogen_C 1815 2110
No external refs found!