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  5. Sam_g28431

Sam_g28431


Description : histone demethylase *(KDM3) & original description: none


Gene families : OG0000328 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000328_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g28431

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00058110 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 OrthoFinder output from all 47 species
AMTR_s00057p00206860 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 OrthoFinder output from all 47 species
Adi_g001620 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g020581 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g113340 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g32361 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g70469 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene13978.t1 Aspi01Gene13978 histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0548.g076441 No alias histone demethylase *(KDM3) & original description: CDS=709-3096 0.04 OrthoFinder output from all 47 species
Ehy_g07685 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
MA_103030g0010 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species
MA_203546g0010 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.01 OrthoFinder output from all 47 species
Mp3g05610.1 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species
Msp_g25890 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g45466 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g04006 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05933 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g082400.4.1 Solyc02g082400 histone demethylase (KDM3). transcription factor (JUMONJI) 0.01 OrthoFinder output from all 47 species
Solyc03g083240.4.1 Solyc03g083240 histone demethylase (KDM3). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species
Spa_g19609 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e010541_P001 Zm00001e010541 histone demethylase (KDM3) 0.03 OrthoFinder output from all 47 species
Zm00001e023535_P001 Zm00001e023535 histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
InterPro domains Description Start Stop
IPR014977 WRC_dom 16 55
IPR018866 Znf-4CXXC_R1 309 377
IPR003347 JmjC_dom 1113 1209
No external refs found!