Sam_g28089

Description : not classified & original description: none

Gene families : OG0000296 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000296_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g28089

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00066p00072310	evm_27.TU.AmTr_v1...	Protein biosynthesis.translation elongation.eEF1A...	0.06	OrthoFinder output from all 47 species
AT1G07920	No alias	GTP binding Elongation factor Tu family protein	0.05	OrthoFinder output from all 47 species
AT1G07930	No alias	GTP binding Elongation factor Tu family protein	0.05	OrthoFinder output from all 47 species
AT1G07940	No alias	GTP binding Elongation factor Tu family protein	0.05	OrthoFinder output from all 47 species
AT5G60390	No alias	GTP binding Elongation factor Tu family protein	0.09	OrthoFinder output from all 47 species
Adi_g055048	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g10935	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Ala_g31488	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Als_g11645	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.04	OrthoFinder output from all 47 species
Als_g26660	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Als_g39127	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.01	OrthoFinder output from all 47 species
Aop_g09508	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Aop_g20702	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.05	OrthoFinder output from all 47 species
Azfi_s0291.g063341	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.09	OrthoFinder output from all 47 species
Cba_g08954	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.02	OrthoFinder output from all 47 species
Ceric.09G081400.1	Ceric.09G081400	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.06	OrthoFinder output from all 47 species
Ceric.11G084400.1	Ceric.11G084400	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Ceric.1Z125000.1	Ceric.1Z125000	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Ceric.1Z240400.1	Ceric.1Z240400	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Ceric.31G073700.1	Ceric.31G073700	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021352.57	No alias	Protein biosynthesis.translation elongation.eEF1A...	0.06	OrthoFinder output from all 47 species
Cre12.g498600	No alias	Elongation factor 1-alpha OS=Glycine max	0.01	OrthoFinder output from all 47 species
Dac_g22627	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Dac_g40329	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.02	OrthoFinder output from all 47 species
Dde_g04362	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.04	OrthoFinder output from all 47 species
Ehy_g06792	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01025638001	No alias	Elongation factor 1-alpha OS=Zea mays	0.03	OrthoFinder output from all 47 species
Gb_17471	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.03	OrthoFinder output from all 47 species
LOC_Os03g08010.1	LOC_Os03g08010	aminoacyl-tRNA binding factor (eEF1A)	0.1	OrthoFinder output from all 47 species
LOC_Os03g08020.1	LOC_Os03g08020	aminoacyl-tRNA binding factor (eEF1A)	0.09	OrthoFinder output from all 47 species
LOC_Os03g08050.1	LOC_Os03g08050	aminoacyl-tRNA binding factor (eEF1A)	0.08	OrthoFinder output from all 47 species
Len_g55835	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.02	OrthoFinder output from all 47 species
Lfl_g07312	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.02	OrthoFinder output from all 47 species
Lfl_g17369	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_59994g0010	No alias	Elongation factor 1-alpha OS=Glycine max...	0.03	OrthoFinder output from all 47 species
MA_651220g0010	No alias	Elongation factor 1-alpha OS=Oryza sativa subsp....	0.02	OrthoFinder output from all 47 species
Mp3g23400.1	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.12	OrthoFinder output from all 47 species
Mp6g00950.1	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.01	OrthoFinder output from all 47 species
Msp_g29578	No alias	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Nbi_g08139	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Ore_g10342	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.02	OrthoFinder output from all 47 species
Ore_g12703	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.02	OrthoFinder output from all 47 species
Pir_g11226	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Pir_g29386	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Pp3c2_6770V3.1	Pp3c2_6770	GTP binding Elongation factor Tu family protein	0.03	OrthoFinder output from all 47 species
Ppi_g05066	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009882	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Sam_g39768	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.07	OrthoFinder output from all 47 species
Smo169717	No alias	Protein biosynthesis.translation elongation.eEF1A...	0.03	OrthoFinder output from all 47 species
Smo171512	No alias	Protein biosynthesis.translation elongation.eEF1A...	0.03	OrthoFinder output from all 47 species
Smo270693	No alias	Protein biosynthesis.translation elongation.eEF1A...	0.03	OrthoFinder output from all 47 species
Solyc06g005060.3.1	Solyc06g005060	aminoacyl-tRNA binding factor (eEF1A)	0.05	OrthoFinder output from all 47 species
Solyc06g009970.3.1	Solyc06g009970	aminoacyl-tRNA binding factor (eEF1A)	0.04	OrthoFinder output from all 47 species
Solyc11g069097.1.1	Solyc11g069097	aminoacyl-tRNA binding factor (eEF1A)	0.03	OrthoFinder output from all 47 species
Solyc11g150146.1.1	Solyc11g150146	aminoacyl-tRNA binding factor (eEF1A)	0.04	OrthoFinder output from all 47 species
Spa_g08926	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.05	OrthoFinder output from all 47 species
Spa_g18945	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Spa_g24424	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.04	OrthoFinder output from all 47 species
Spa_g24425	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.05	OrthoFinder output from all 47 species
Spa_g46936	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Spa_g50271	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.04	OrthoFinder output from all 47 species
Spa_g50272	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.05	OrthoFinder output from all 47 species
Spa_g50273	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.04	OrthoFinder output from all 47 species
Zm00001e026762_P001	Zm00001e026762	aminoacyl-tRNA binding factor (eEF1A)	0.06	OrthoFinder output from all 47 species
Zm00001e026763_P003	Zm00001e026763	aminoacyl-tRNA binding factor (eEF1A)	0.07	OrthoFinder output from all 47 species
Zm00001e030598_P002	Zm00001e030598	aminoacyl-tRNA binding factor (eEF1A)	0.05	OrthoFinder output from all 47 species
Zm00001e031390_P004	Zm00001e031390	aminoacyl-tRNA binding factor (eEF1A)	0.08	OrthoFinder output from all 47 species
Zm00001e031391_P002	Zm00001e031391	aminoacyl-tRNA binding factor (eEF1A)	0.08	OrthoFinder output from all 47 species
Zm00001e031407_P001	Zm00001e031407	aminoacyl-tRNA binding factor (eEF1A)	0.06	OrthoFinder output from all 47 species
Zm00001e037355_P001	Zm00001e037355	aminoacyl-tRNA binding factor (eEF1A)	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0004814	arginine-tRNA ligase activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006420	arginyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006553	lysine metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
MF	GO:0008837	diaminopimelate epimerase activity	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	HCCA
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009085	lysine biosynthetic process	IEP	HCCA
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016854	racemase and epimerase activity	IEP	HCCA
MF	GO:0016855	racemase and epimerase activity, acting on amino acids and derivatives	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
MF	GO:0036361	racemase activity, acting on amino acids and derivatives	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0046451	diaminopimelate metabolic process	IEP	HCCA
MF	GO:0047661	amino-acid racemase activity	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000795	T_Tr_GTP-bd_dom	30	203

External Links

No external refs found!

Sam_g28089

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation