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  5. Sam_g27573

Sam_g27573


Description : protease *(Deg) & original description: none


Gene families : OG0000580 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000580_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27573

Target Alias Description ECC score Gene Family Method Actions
AT5G40200 DegP9 DegP protease 9 0.03 OrthoFinder output from all 47 species
Aev_g03317 DegP9 protease *(Deg) & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001094.14 DegP9 Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder output from all 47 species
Cre13.g579901 DegP9 Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder output from all 47 species
Dac_g08336 DegP9 protease *(Deg) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os05g34460.1 DegP10, LOC_Os05g34460 protease (Deg) 0.02 OrthoFinder output from all 47 species
MA_17181g0010 DegP9 protease (Deg) 0.02 OrthoFinder output from all 47 species
MA_230203g0010 DegP10 Protease Do-like 10, mitochondrial OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_7242206g0010 DegP10 protease (Deg) 0.04 OrthoFinder output from all 47 species
Mp1g05470.1 DegP9 protease (Deg) 0.01 OrthoFinder output from all 47 species
Mp5g11110.1 DegP10 protease (Deg) 0.02 OrthoFinder output from all 47 species
Solyc12g026400.2.1 DegP9, Solyc12g026400 protease (Deg) 0.03 OrthoFinder output from all 47 species
Spa_g10123 DegP9 protease *(Deg) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e015791_P002 DegP9, Zm00001e015791 protease (Deg) 0.03 OrthoFinder output from all 47 species
Zm00001e023912_P001 DegP9, Zm00001e023912 protease (Deg) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR041517 DEGP_PDZ 451 595
No external refs found!