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  5. Sam_g26549

Sam_g26549


Description : not classified & original description: none


Gene families : OG0007102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g26549

Target Alias Description ECC score Gene Family Method Actions
Aop_g11781 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0198.g057430 No alias not classified & original description: CDS=1-1224 0.02 OrthoFinder output from all 47 species
Ceric.23G056700.1 Ceric.23G056700 not classified & original description: pacid=50610500... 0.05 OrthoFinder output from all 47 species
Dde_g16076 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04522 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01001717001 No alias CBBY-like protein OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Lfl_g38700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08135 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g19801 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g61323 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g069410.4.1 Solyc02g069410 CBBY-like protein OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!