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  5. Sam_g25581

Sam_g25581


Description : organelle RNA splicing factor *(APO) & original description: none


Gene families : OG0001840 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001840_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g25581

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00027190 emb1629, APO2,... APO protein 2, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Ehy_g25543 APO1 organelle RNA splicing factor *(APO) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g00939 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc08g080250.4.1 APO1, Solyc08g080250 APO protein 1, chloroplastic OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0040008 regulation of growth IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0045927 positive regulation of growth IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR023342 APO_dom 288 414
IPR023342 APO_dom 27 212
No external refs found!