Sam_g24411

Description : HD-ZIP I/II-type transcription factor & original description: none

Gene families : OG0000129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g24411

Target	Alias	Description	ECC score	Gene Family Method
Adi_g104185	ATHB1, ATHB-1,...	HD-ZIP I/II-type transcription factor & original...	0.06	OrthoFinder output from all 47 species
Ala_g01669	ATHB1, ATHB-1,...	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Als_g18491	ATHB1, ATHB-1,...	regulatory protein *(LMI1) of floral meristem identity...	0.03	OrthoFinder output from all 47 species
Als_g23746	ATHB5, ATHB-5, HB5	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000789.4	HAT14	RNA biosynthesis.transcriptional activation.HB...	0.02	OrthoFinder output from all 47 species
Lfl_g03374	ATHB16, HB16, ATHB-16	regulatory protein *(LMI1) of floral meristem identity...	0.04	OrthoFinder output from all 47 species
Msp_g05256	HB51, ATHB51, LMI1	HD-ZIP I/II-type transcription factor & original...	0.01	OrthoFinder output from all 47 species
Msp_g09793	ATHB5, ATHB-5, HB5	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Msp_g44127	ATHB3, HB-3, ATHB-3, HAT7	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ore_g04447	ATHB16, HB16, ATHB-16	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Pir_g05818	ATHB5, ATHB-5, HB5	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g002010	ATHB5, ATHB-5, HB5	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010551	ATHB5, ATHB-5, HB5	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016096	ATHB5, ATHB-5, HB5	not classified & original description: CDS=182-1414	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016153	ATHB3, HB-3, ATHB-3, HAT7	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sam_g08141	No alias	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sam_g37807	No alias	HD-ZIP I/II-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Tin_g19598	ATHB5, ATHB-5, HB5	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0004813	alanine-tRNA ligase activity	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006419	alanyl-tRNA aminoacylation	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0032977	membrane insertase activity	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140597	protein carrier chaperone	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	34	80
IPR003106	Leu_zip_homeo	82	121

External Links

No external refs found!

Sam_g24411

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation