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  5. Sam_g21061

Sam_g21061


Description : not classified & original description: none


Gene families : OG0000006 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g21061
Cluster HCCA: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Adi_g021257 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g026068 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g031699 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g047675 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g02787 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g26883 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g46683 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g15650 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g30353 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g21451 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g39136 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g31478 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene07803.t1 ATGSL10, gsl10,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene15345.t2 Aspi01Gene15345 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene16022.t1 Aspi01Gene16022 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene16713.t1 Aspi01Gene16713 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene23330.t1 Aspi01Gene23330 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene37513.t1 Aspi01Gene37513 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene50744.t1 Aspi01Gene50744 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene61548.t1 Aspi01Gene61548 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000026 No alias not classified & original description: CDS=1-534 0.01 OrthoFinder output from all 47 species
Azfi_s0068.g036397 No alias not classified & original description: CDS=1-366 0.04 OrthoFinder output from all 47 species
Ceric.15G046100.1 Ceric.15G046100 not classified & original description: pacid=50639635... 0.02 OrthoFinder output from all 47 species
Dde_g20412 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05785 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os11g08230.1 LOC_Os11g08230 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g25360 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g29557 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g30234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05046 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11145 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_15543g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Nbi_g14946 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g39160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g00646 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g01816 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g11887 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g12708 ORF102 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g17102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19303 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g21259 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g22634 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g22637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g38150 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g45145 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g45393 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g18294 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g09365 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g12015 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c16_2611V3.1 Pp3c16_2611 No annotation 0.01 OrthoFinder output from all 47 species
Pp3c19_21430V3.1 Pp3c19_21430 No annotation 0.01 OrthoFinder output from all 47 species
Ppi_g64349 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g00480 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g13633 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g21924 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g23321 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g32897 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000477 RT_dom 3 196
No external refs found!