Sam_g18065

Description : nucleoporin of nuclear pore complex *(NUA) & original description: none

Gene families : OG0003960 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003960_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g18065

Target	Alias	Description	ECC score	Gene Family Method
AT1G79280	NUA, AtTPR	nuclear pore anchor	0.02	OrthoFinder output from all 47 species
Adi_g055513	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.02	OrthoFinder output from all 47 species
Aev_g02612	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.02	OrthoFinder output from all 47 species
Ala_g07174	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.04	OrthoFinder output from all 47 species
Aop_g09061	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.02	OrthoFinder output from all 47 species
Cba_g20856	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g33695	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.03	OrthoFinder output from all 47 species
Ceric.23G046200.1	NUA, AtTPR,...	nucleoporin of nuclear pore complex *(NUA) & original...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000404.46	No alias	Protein translocation.nucleus.nucleocytoplasmic...	0.01	OrthoFinder output from all 47 species
Dac_g14678	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.03	OrthoFinder output from all 47 species
Dcu_g03218	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.05	OrthoFinder output from all 47 species
GSVIVT01036698001	NUA, AtTPR	Protein translocation.nucleus.nucleocytoplasmic...	0.03	OrthoFinder output from all 47 species
Gb_36757	NUA, AtTPR	NUA nucleoporin of nuclear pore complex	0.02	OrthoFinder output from all 47 species
LOC_Os02g50790.2	LOC_Os02g50790	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
LOC_Os02g50799.1	NUA, AtTPR,...	NUA nucleoporin of nuclear pore complex	0.02	OrthoFinder output from all 47 species
Len_g13910	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.02	OrthoFinder output from all 47 species
Mp2g14600.1	NUA, AtTPR	NUA nucleoporin of nuclear pore complex	0.01	OrthoFinder output from all 47 species
Msp_g15712	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.04	OrthoFinder output from all 47 species
Pir_g20507	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.02	OrthoFinder output from all 47 species
Ppi_g44472	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009910	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.02	OrthoFinder output from all 47 species
Smo444132	NUA, AtTPR	Protein translocation.nucleus.nucleocytoplasmic...	0.03	OrthoFinder output from all 47 species
Tin_g12694	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.02	OrthoFinder output from all 47 species
Zm00001e023916_P004	NUA, AtTPR,...	NUA nucleoporin of nuclear pore complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006606	protein import into nucleus	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034504	protein localization to nucleus	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051170	import into nucleus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
BP	GO:0002097	tRNA wobble base modification	IEP	HCCA
BP	GO:0002098	tRNA wobble uridine modification	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0008170	N-methyltransferase activity	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
MF	GO:0008276	protein methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016278	lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
MF	GO:0018024	histone lysine N-methyltransferase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
MF	GO:0030515	snoRNA binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
MF	GO:0031267	small GTPase binding	IEP	HCCA
MF	GO:0031625	ubiquitin protein ligase binding	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
CC	GO:0033588	elongator holoenzyme complex	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
MF	GO:0034511	U3 snoRNA binding	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0042054	histone methyltransferase activity	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0051020	GTPase binding	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012929	TPR/MLP1	1065	1190

External Links

No external refs found!

Sam_g18065

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation