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  5. Sam_g16188

Sam_g16188


Description : E3 ubiquitin ligase *(SAUL) & original description: none


Gene families : OG0001077 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001077_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g16188
Cluster HCCA: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00119020 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
AMTR_s00044p00145170 PUB44, SAUL1,... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Aev_g09177 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05710 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene26369.t1 PUB44, SAUL1,... E3 ubiquitin ligase *(SAUL) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0373.g067169 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: CDS=299-2836 0.03 OrthoFinder output from all 47 species
Cba_g13723 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G046500.1 PUB44, SAUL1,... E3 ubiquitin ligase *(SAUL) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.14G057700.1 PUB44, SAUL1,... E3 ubiquitin ligase *(SAUL) & original description:... 0.08 OrthoFinder output from all 47 species
Dcu_g03175 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01001115001 PUB8, B80 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
GSVIVT01013395001 PUB44, SAUL1, ATPUB44 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
GSVIVT01024723001 PUB44, SAUL1, ATPUB44 Protein degradation.peptide tagging.Ubiquitin... 0.05 OrthoFinder output from all 47 species
LOC_Os03g45420.1 PUB44, SAUL1,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
LOC_Os06g16410.1 LOC_Os06g16410 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
LOC_Os12g17880.1 PUB44, SAUL1,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
LOC_Os12g17900.1 PUB44, SAUL1,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Mp8g11800.1 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Msp_g13315 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004062 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: CDS=156-2609 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019783 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: CDS=770-3868 0.03 OrthoFinder output from all 47 species
Solyc04g082570.3.1 PUB44, SAUL1,... E3 ubiquitin ligase (PUB) 0.04 OrthoFinder output from all 47 species
Spa_g05726 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 253 327
No external refs found!