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  5. Sam_g16150

Sam_g16150


Description : component *(SecA2) of inner envelope Sec2 post-import insertion system & original description: none


Gene families : OG0001541 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001541_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g16150

Target Alias Description ECC score Gene Family Method Actions
Aev_g15097 SECA2 component *(SecA2) of inner envelope Sec2 post-import... 0.04 OrthoFinder output from all 47 species
Als_g14938 SECA1, AtcpSecA, AGY1 component *(SecA1) of thylakoid membrane Sec1... 0.02 OrthoFinder output from all 47 species
Aop_g13689 SECA2 component *(SecA2) of inner envelope Sec2 post-import... 0.03 OrthoFinder output from all 47 species
Aspi01Gene24355.t1 SECA1, AtcpSecA,... component *(SecA1) of thylakoid membrane Sec1... 0.02 OrthoFinder output from all 47 species
Azfi_s0155.g053632 SECA1, AtcpSecA, AGY1 component *(SecA1) of thylakoid membrane Sec1... 0.03 OrthoFinder output from all 47 species
Dcu_g04140 SECA2 component *(SecA2) of inner envelope Sec2 post-import... 0.03 OrthoFinder output from all 47 species
GSVIVT01008813001 SECA2 Protein translocation.chloroplast.inner envelope Sec2... 0.02 OrthoFinder output from all 47 species
Mp5g18780.1 SECA2 component SecA2 of inner envelope Sec2 post-import... 0.02 OrthoFinder output from all 47 species
Msp_g14539 SECA2 component *(SecA2) of inner envelope Sec2 post-import... 0.02 OrthoFinder output from all 47 species
Ore_g18515 SECA1, AtcpSecA, AGY1 component *(SecA1) of thylakoid membrane Sec1... 0.02 OrthoFinder output from all 47 species
Pir_g59525 SECA2 component *(SecA2) of inner envelope Sec2 post-import... 0.04 OrthoFinder output from all 47 species
Ppi_g05317 SECA1, AtcpSecA, AGY1 component *(SecA1) of thylakoid membrane Sec1... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011794 SECA2 component *(SecA2) of inner envelope Sec2 post-import... 0.03 OrthoFinder output from all 47 species
Solyc11g005020.3.1 SECA2, Solyc11g005020 component SecA2 of inner envelope Sec2 post-import... 0.03 OrthoFinder output from all 47 species
Tin_g09803 SECA2 component *(SecA2) of inner envelope Sec2 post-import... 0.03 OrthoFinder output from all 47 species
Zm00001e008967_P001 SECA2, Zm00001e008967 component SecA2 of inner envelope Sec2 post-import... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
BP GO:0017038 protein import IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011116 SecA_Wing/Scaffold 773 1049
IPR011115 SecA_DEAD 86 453
IPR011130 SecA_preprotein_X-link_dom 310 410
No external refs found!