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  5. Sam_g13532

Sam_g13532


Description : EC_4.1 carbon-carbon lyase & original description: none


Gene families : OG0000643 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000643_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g13532
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
Smo447920 PPC2, ATPPC2 Photosynthesis.CAM/C4 photosynthesis.phosphoenolpyruvate... 0.02 OrthoFinder output from all 47 species
Zm00001e014333_P001 ATPPC3, PPC3,... PEP carboxylase 0.02 OrthoFinder output from all 47 species
Zm00001e024881_P001 PEPC1, ATPEPC1,... PEP carboxylase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006099 tricarboxylic acid cycle IEA Interproscan
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEA Interproscan
BP GO:0015977 carbon fixation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR021135 PEP_COase 49 975
No external refs found!