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  5. Sam_g12365

Sam_g12365


Description : E1 ubiquitin-activating enzyme & original description: none


Gene families : OG0000675 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000675_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g12365
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00153p00065050 UBA1, MOS5,... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AT2G30110 UBA1, MOS5, ATUBA1 ubiquitin-activating enzyme 1 0.02 OrthoFinder output from all 47 species
AT5G06460 ATUBA2, UBA 2 ubiquitin activating enzyme 2 0.03 OrthoFinder output from all 47 species
Adi_g001009 UBA1, MOS5, ATUBA1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g081325 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g03400 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18272 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02615 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.02 OrthoFinder output from all 47 species
Als_g16646 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g17749 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene19298.t1 UBA1, MOS5,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene19300.t1 UBA1, MOS5,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G093700.1 UBA1, MOS5,... E1 ubiquitin-activating enzyme & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.01G117400.1 UBA1, MOS5,... E1 ubiquitin-activating enzyme & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.1Z131100.1 ATUBA2, UBA 2,... E1 ubiquitin-activating enzyme & original description:... 0.06 OrthoFinder output from all 47 species
Ehy_g08656 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01024680001 UBA1, MOS5, ATUBA1 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Gb_00042 UBA1, MOS5, ATUBA1 ubiquitin-activating E1 protein 0.04 OrthoFinder output from all 47 species
Gb_01549 UBA1, MOS5, ATUBA1 ubiquitin-activating E1 protein 0.03 OrthoFinder output from all 47 species
Gb_06843 UBA1, MOS5, ATUBA1 ubiquitin-activating E1 protein 0.04 OrthoFinder output from all 47 species
Len_g05461 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.04 OrthoFinder output from all 47 species
MA_126865g0010 UBA1, MOS5, ATUBA1 Ubiquitin-activating enzyme E1 2 OS=Triticum aestivum... 0.02 OrthoFinder output from all 47 species
Mp4g15300.1 ATUBA2, UBA 2 ubiquitin-activating E1 protein 0.03 OrthoFinder output from all 47 species
Mp7g08080.1 UBA1, MOS5, ATUBA1 ubiquitin-activating E1 protein 0.01 OrthoFinder output from all 47 species
Msp_g05031 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g06307 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10410 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06608 ATUBA2, UBA 2 E1 ubiquitin-activating enzyme & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g27854 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g42996 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11819 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g55594 UBA1, MOS5, ATUBA1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g02388 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015761 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description:... 0.02 OrthoFinder output from all 47 species
Smo179776 UBA1, MOS5, ATUBA1 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Solyc09g018450.3.1 UBA1, MOS5,... ubiquitin-activating E1 protein 0.04 OrthoFinder output from all 47 species
Tin_g04182 UBA1, MOS5, ATUBA1 E1 ubiquiTin-activaTing enzyme & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g11189 UBA1, MOS5, ATUBA1 E1 ubiquiTin-activaTing enzyme & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e023945_P001 UBA1, MOS5,... ubiquitin-activating E1 protein 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0006906 vesicle fusion IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016050 vesicle organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0030527 structural constituent of chromatin IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048280 vesicle fusion with Golgi apparatus IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0061025 membrane fusion IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
CC GO:0070939 Dsl1/NZR complex IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0090174 organelle membrane fusion IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000594 ThiF_NAD_FAD-bd 481 973
IPR000594 ThiF_NAD_FAD-bd 26 465
IPR019572 UBA_E1_SCCH 669 922
IPR018965 Ub-activating_enz_E1_C 998 1091
IPR032418 E1_FCCH 200 267
IPR032420 E1_4HB 271 343
No external refs found!