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  5. Sam_g11626

Sam_g11626


Description : ATPase component *(PIE1) of SWR1 chromatin remodeling complex & original description: none


Gene families : OG0002986 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002986_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g11626

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00085p00089520 SRCAP, PIE1,... Chromatin organisation.chromatin remodeling... 0.05 OrthoFinder output from all 47 species
AT3G12810 SRCAP, PIE1, chr13 SNF2 domain-containing protein / helicase... 0.06 OrthoFinder output from all 47 species
Adi_g086891 SRCAP, PIE1, chr13 ATPase component *(PIE1) of SWR1 chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Ala_g20021 SRCAP, PIE1, chr13 ATPase component *(PIE1) of SWR1 chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Ala_g21115 SRCAP, PIE1, chr13 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04504 SRCAP, PIE1, chr13 ATPase component *(PIE1) of SWR1 chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Azfi_s0329.g065325 SRCAP, PIE1, chr13 ATPase component *(PIE1) of SWR1 chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Cba_g12343 SRCAP, PIE1, chr13 ATPase component *(PIE1) of SWR1 chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Ceric.22G011100.1 SRCAP, PIE1,... ATPase component *(PIE1) of SWR1 chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000194.25 SRCAP, PIE1, chr13 Chromatin organisation.chromatin remodeling... 0.01 OrthoFinder output from all 47 species
Cre14.g618860 SRCAP, PIE1, chr13 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Dcu_g08326 SRCAP, PIE1, chr13 ATPase component *(PIE1) of SWR1 chromatin remodeling... 0.05 OrthoFinder output from all 47 species
Dcu_g39491 SRCAP, PIE1, chr13 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01033511001 SRCAP, PIE1, chr13 Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1... 0.04 OrthoFinder output from all 47 species
Gb_04358 SRCAP, PIE1, chr13 ATPase component PIE1 of SWR1 chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
Gb_30812 SRCAP, PIE1, chr13 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os02g46450.2 SRCAP, PIE1,... ATPase component PIE1 of SWR1 chromatin remodeling complex 0.04 OrthoFinder output from all 47 species
MA_424432g0010 SRCAP, PIE1, chr13 ATPase component PIE1 of SWR1 chromatin remodeling complex 0.04 OrthoFinder output from all 47 species
MA_64269g0010 SRCAP, PIE1, chr13 Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1... 0.05 OrthoFinder output from all 47 species
MA_9456975g0010 SRCAP, PIE1, chr13 Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1... 0.03 OrthoFinder output from all 47 species
Mp7g15670.1 SRCAP, PIE1, chr13 ATPase component PIE1 of SWR1 chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
Nbi_g13998 SRCAP, PIE1, chr13 ATPase component *(PIE1) of SWR1 chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Pir_g11854 SRCAP, PIE1, chr13 ATPase component *(PIE1) of SWR1 chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Ppi_g56964 SRCAP, PIE1, chr13 ATPase component *(PIE1) of SWR1 chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Solyc03g063220.2.1 SRCAP, PIE1,... ATPase component PIE1 of SWR1 chromatin remodeling complex 0.05 OrthoFinder output from all 47 species
Zm00001e015483_P001 SRCAP, PIE1,... ATPase component PIE1 of SWR1 chromatin remodeling complex 0.06 OrthoFinder output from all 47 species
Zm00001e023267_P001 SRCAP, PIE1,... ATPase component PIE1 of SWR1 chromatin remodeling complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006474 N-terminal protein amino acid acetylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0017196 N-terminal peptidyl-methionine acetylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018206 peptidyl-methionine modification IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
CC GO:0031414 N-terminal protein acetyltransferase complex IEP HCCA
CC GO:0031417 NatC complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR014012 HSA_dom 32 98
IPR001005 SANT/Myb 1543 1597
IPR000330 SNF2_N 434 705
IPR001650 Helicase_C 961 1069
No external refs found!