1. Home
  2. Species
  3. Salvinia molesta
  4. Sequence
  5. Sam_g09931

Sam_g09931


Description : pre-60S ribosomal subunit assembly factor *(RPF1) & original description: none


Gene families : OG0005331 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005331_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g09931
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
Aev_g13855 MEE49 pre-60S ribosomal subunit assembly factor *(RPF1) &... 0.02 OrthoFinder output from all 47 species
Ceric.34G008100.1 MEE49, Ceric.34G008100 pre-60S ribosomal subunit assembly factor *(RPF1) &... 0.02 OrthoFinder output from all 47 species
Lfl_g16243 MEE49 pre-60S ribosomal subunit assembly factor *(RPF1) &... 0.02 OrthoFinder output from all 47 species
Smo185811 MEE49 No description available 0.03 OrthoFinder output from all 47 species
Spa_g07798 MEE49 pre-60S ribosomal subunit assembly factor *(RPF1) &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
MF GO:0030527 structural constituent of chromatin IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR007109 Brix 121 314
No external refs found!