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  5. Sam_g07520

Sam_g07520


Description : pre-60S ribosomal subunit assembly factor *(SMO4) & original description: none


Gene families : OG0004538 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004538_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g07520

Target Alias Description ECC score Gene Family Method Actions
AT2G40430 No alias CONTAINS InterPro DOMAIN/s: P60-like... 0.03 OrthoFinder output from all 47 species
Adi_g025240 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01580 No alias pre-60S ribosomal subunit assembly factor *(SMO4) &... 0.02 OrthoFinder output from all 47 species
Cre07.g348250 No alias Ribosome biogenesis protein NOP53 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dac_g11687 No alias pre-60S ribosomal subunit assembly factor *(SMO4) &... 0.03 OrthoFinder output from all 47 species
Ehy_g01055 No alias pre-60S ribosomal subunit assembly factor *(SMO4) &... 0.02 OrthoFinder output from all 47 species
LOC_Os05g05220.1 LOC_Os05g05220 pre-60S ribosomal subunit assembly factor (SMO4) 0.02 OrthoFinder output from all 47 species
Mp1g17930.1 No alias pre-60S ribosomal subunit assembly factor (SMO4) 0.02 OrthoFinder output from all 47 species
Nbi_g07497 No alias pre-60S ribosomal subunit assembly factor *(SMO4) &... 0.02 OrthoFinder output from all 47 species
Solyc02g068420.4.1 Solyc02g068420 pre-60S ribosomal subunit assembly factor (SMO4) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004814 arginine-tRNA ligase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006420 arginyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR011687 Nop53/GLTSCR2 4 335
No external refs found!