Aob_g26620 (CRF3)

Aliases : CRF3

Description : subgroup ERF-VI transcription factor & original description: none

Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aob_g26620
Cluster	HCCA: Cluster_107

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00268280	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	OrthoFinder output from all 47 species
AT1G74930	ORA47	Integrase-type DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
AT1G78080	RAP2.4	related to AP2 4	0.03	OrthoFinder output from all 47 species
AT4G17490	ERF-6-6, ERF6, ATERF6	ethylene responsive element binding factor 6	0.03	OrthoFinder output from all 47 species
AT5G21960	No alias	Integrase-type DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
Als_g07122	ATERF12, ERF12	subgroup ERF-VIII transcription factor & original...	0.04	OrthoFinder output from all 47 species
Als_g10058	ERF-1, ATERF-1	subgroup ERF-IX transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g61303	No alias	subgroup ERF-IV/DREB2 transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ceric.20G089300.1	PUCHI, Ceric.20G089300	subgroup ERF-VIII transcription factor & original...	0.05	OrthoFinder output from all 47 species
Dac_g09321	HRE2	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Dac_g11691	DREB2A, DREB2	subgroup ERF-IV/DREB2 transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dac_g33437	TINY2	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dcu_g00794	ORA47	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g38897	ERF-1, ATERF-1	subgroup ERF-IX transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g25048	tny	subgroup ERF-III transcription factor & original...	0.04	OrthoFinder output from all 47 species
GSVIVT01013935001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	OrthoFinder output from all 47 species
GSVIVT01021098001	ATERF4, RAP2.5,...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	OrthoFinder output from all 47 species
LOC_Os05g27930.1	DREB2A, DREB2,...	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
LOC_Os08g35240.1	LOC_Os08g35240	Ethylene-responsive transcription factor ERF017...	0.02	OrthoFinder output from all 47 species
LOC_Os09g28440.1	RRTF1, LOC_Os09g28440	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
LOC_Os09g35010.1	CBF4, DREB1D,...	Dehydration-responsive element-binding protein 1B...	0.03	OrthoFinder output from all 47 species
Lfl_g22108	No alias	subgroup ERF-I transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
MA_10343854g0010	ORA47	transcription factor (DREB)	0.04	OrthoFinder output from all 47 species
MA_10431706g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_108992g0010	ORA47	transcription factor (DREB)	0.04	OrthoFinder output from all 47 species
MA_23271g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_367366g0010	ORA47	transcription factor (DREB)	0.03	OrthoFinder output from all 47 species
MA_426919g0030	No alias	transcription factor (DREB)	0.03	OrthoFinder output from all 47 species
MA_463250g0010	TINY2	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
MA_55226g0020	No alias	Ethylene-responsive transcription factor ERF016...	0.03	OrthoFinder output from all 47 species
Solyc01g090340.3.1	ATERF13, ERF13,...	Ethylene-responsive transcription factor 13...	0.03	OrthoFinder output from all 47 species
Solyc01g108240.3.1	RRTF1, Solyc01g108240	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Solyc03g093540.1.1	Solyc03g093540	transcription factor (ERF)	0.04	OrthoFinder output from all 47 species
Solyc03g093550.1.1	Solyc03g093550	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
Solyc08g078180.1.1	ERF2, ATERF2,...	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
Solyc09g066350.1.1	Solyc09g066350	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
Solyc09g089910.1.1	Solyc09g089910	transcription factor (ERF). transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
Solyc10g006130.1.1	ATERF3, ERF3,...	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
Solyc10g050960.3.1	RRTF1, Solyc10g050960	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Solyc11g042560.1.1	Solyc11g042560	transcription factor (DREB)	0.03	OrthoFinder output from all 47 species
Spa_g21730	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g10351	AtERF48, DREB2C	subgroup ERF-IV/DREB2 transcription factor & original...	0.03	OrthoFinder output from all 47 species
Tin_g14152	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g15381	DREB26	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g29296	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e002358_P001	ERF-6-6, ERF6,...	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
Zm00001e008306_P001	Rap2.6L, Zm00001e008306	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
Zm00001e013096_P001	ATERF3, ERF3,...	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Zm00001e023816_P001	Zm00001e023816	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Zm00001e024669_P001	ERF110, Zm00001e024669	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Zm00001e029878_P001	DREB1A, ATCBF3,...	transcription factor (DREB)	0.03	OrthoFinder output from all 47 species
Zm00001e041539_P001	ERF-1, ATERF-1,...	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	HCCA
MF	GO:0004497	monooxygenase activity	IEP	HCCA
MF	GO:0005319	lipid transporter activity	IEP	HCCA
MF	GO:0005506	iron ion binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006869	lipid transport	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
MF	GO:0008171	O-methyltransferase activity	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
MF	GO:0020037	heme binding	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0031968	organelle outer membrane	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0061024	membrane organization	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:0120009	intermembrane lipid transfer	IEP	HCCA
MF	GO:0120013	lipid transfer activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	112	161

External Links

No external refs found!

Aob_g26620 (CRF3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation