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  5. Aob_g08410

Aob_g08410


Description : component *(SRP54) of SRP (signal recognition particle) complex & original description: none


Gene families : OG0003514 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003514_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g08410
Cluster HCCA: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
Aev_g04048 No alias component *(SRP54) of SRP (signal recognition particle)... 0.02 OrthoFinder output from all 47 species
Aspi01Gene48800.t1 Aspi01Gene48800 component *(SRP54) of SRP (signal recognition particle)... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021254.24 No alias Protein translocation.endoplasmic... 0.01 OrthoFinder output from all 47 species
GSVIVT01017362001 No alias Protein translocation.endoplasmic... 0.02 OrthoFinder output from all 47 species
Nbi_g10922 No alias component *(SRP54) of SRP (signal recognition particle)... 0.02 OrthoFinder output from all 47 species
Ppi_g03018 No alias component *(SRP54) of SRP (signal recognition particle)... 0.02 OrthoFinder output from all 47 species
Solyc12g042740.2.1 Solyc12g042740 component SRP54 of SRP (signal recognition particle) complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEA Interproscan
MF GO:0008312 7S RNA binding IEA Interproscan
CC GO:0048500 signal recognition particle IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006817 phosphate ion transport IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008146 sulfotransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043484 regulation of RNA splicing IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP HCCA
BP GO:0050684 regulation of mRNA processing IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0080009 mRNA methylation IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1903311 regulation of mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000897 SRP54_GTPase_dom 101 296
IPR013822 Signal_recog_particl_SRP54_hlx 6 83
IPR004125 Signal_recog_particle_SRP54_M 328 428
No external refs found!