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  5. Aob_g02304

Aob_g02304 (FUS1, EMB168, DET340,...)


Aliases : FUS1, EMB168, DET340, ATCOP1, COP1

Description : component *(COP1) of COP1-SPA light signal transduction ubiquitin E3 ligase complex & original description: none


Gene families : OG0000638 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000638_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g02304

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00097p00139510 SPA2,... External stimuli response.light.red/far red... 0.03 OrthoFinder output from all 47 species
Adi_g008850 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.03 OrthoFinder output from all 47 species
Ala_g07122 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.04 OrthoFinder output from all 47 species
Ala_g07511 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.03 OrthoFinder output from all 47 species
Ala_g09701 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.02 OrthoFinder output from all 47 species
Als_g24085 SPA3 regulatory component *(SPA) of COP1-SPA light signal... 0.03 OrthoFinder output from all 47 species
Aob_g16328 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.05 OrthoFinder output from all 47 species
Aspi01Gene00445.t1 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.03 OrthoFinder output from all 47 species
Aspi01Gene13976.t1 SPA3, Aspi01Gene13976 regulatory component *(SPA) of COP1-SPA light signal... 0.03 OrthoFinder output from all 47 species
Aspi01Gene53622.t1 SPA3, Aspi01Gene53622 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene53623.t1 SPA3, Aspi01Gene53623 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0004.g008529 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.03 OrthoFinder output from all 47 species
Cba_g15102 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.04 OrthoFinder output from all 47 species
Cba_g25452 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.04 OrthoFinder output from all 47 species
Ceric.12G047000.1 SPA4, Ceric.12G047000 regulatory component *(SPA) of COP1-SPA light signal... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020964.35 FUS1, EMB168,... Protein modification.phosphorylation.PEK kinase 0.02 OrthoFinder output from all 47 species
Dde_g23991 SPA4 EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
GSVIVT01007271001 FUS1, EMB168,... External stimuli response.light.red/far red... 0.05 OrthoFinder output from all 47 species
GSVIVT01020559001 SPA3 Protein modification.phosphorylation.PEK kinase 0.03 OrthoFinder output from all 47 species
GSVIVT01027054001 SPA1 External stimuli response.light.red/far red... 0.06 OrthoFinder output from all 47 species
Len_g13907 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.03 OrthoFinder output from all 47 species
Nbi_g06333 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.03 OrthoFinder output from all 47 species
Ore_g26130 SPA3 regulatory component *(SPA) of COP1-SPA light signal... 0.04 OrthoFinder output from all 47 species
Ppi_g49237 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g003993 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.04 OrthoFinder output from all 47 species
Smo141846 FUS1, EMB168,... External stimuli response.light.red/far red... 0.03 OrthoFinder output from all 47 species
Smo98534 SPA4 External stimuli response.light.red/far red... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 464 501
IPR001680 WD40_repeat 551 586
No external refs found!