1. Home
  2. Species
  3. Davallia denticulata
  4. Sequence
  5. Dde_g46091

Dde_g46091


Description : assembly factor involved in RuBisCo assembly *(RbcX) & original description: none


Gene families : OG0005102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005102_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g46091
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
Aob_g01138 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.07 OrthoFinder output from all 47 species
Aob_g25994 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Aop_g00191 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.06 OrthoFinder output from all 47 species
Aspi01Gene63852.t1 Aspi01Gene63852 assembly factor involved in RuBisCo assembly *(RbcX) &... 0.06 OrthoFinder output from all 47 species
Cba_g46690 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.1 OrthoFinder output from all 47 species
Ceric.15G035500.1 Ceric.15G035500 assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Ceric.33G059700.1 Ceric.33G059700 assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Dac_g08983 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.09 OrthoFinder output from all 47 species
Dcu_g04377 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.09 OrthoFinder output from all 47 species
Ehy_g00615 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01032095001 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Gb_02160 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os07g38230.1 LOC_Os07g38230 RbcX assembly factor involved in RuBisCo assembly 0.04 OrthoFinder output from all 47 species
Len_g00251 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.05 OrthoFinder output from all 47 species
Lfl_g05877 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Mp1g26500.1 No alias RbcX assembly factor involved in RuBisCo assembly 0.07 OrthoFinder output from all 47 species
Msp_g05315 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Ore_g04011 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.02 OrthoFinder output from all 47 species
Ore_g16545 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.04 OrthoFinder output from all 47 species
Pir_g00338 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.07 OrthoFinder output from all 47 species
Pnu_g13514 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Pnu_g19931 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.02 OrthoFinder output from all 47 species
Pp3c12_1270V3.1 Pp3c12_1270 Chaperonin-like RbcX protein 0.01 OrthoFinder output from all 47 species
Sam_g25402 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Spa_g13070 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.04 OrthoFinder output from all 47 species
Spa_g46694 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0044183 protein folding chaperone IEA Interproscan
BP GO:0110102 ribulose bisphosphate carboxylase complex assembly IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009512 cytochrome b6f complex IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0051920 peroxiredoxin activity IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003435 Chaperonin_RcbX 90 191
No external refs found!