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  5. Dde_g25705

Dde_g25705 (ATKRS-1)


Aliases : ATKRS-1

Description : EC_6.1 ligase forming carbon-oxygen bond & original description: none


Gene families : OG0003653 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003653_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g25705
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00070350 ATKRS-1,... Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 OrthoFinder output from all 47 species
Adi_g113211 ATKRS-1 lysine-tRNA ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g01326 ATKRS-1 EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020510.54 ATKRS-1 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020510.55 ATKRS-1 Lysine--tRNA ligase OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
Dac_g28002 ATKRS-1 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
LOC_Os03g38980.1 ATKRS-1, LOC_Os03g38980 lysine-tRNA ligase 0.04 OrthoFinder output from all 47 species
Len_g39180 ATKRS-1 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
MA_1005833g0010 ATKRS-1 Lysine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
MA_1153040g0010 ATKRS-1 Lysine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Mp4g22190.1 ATKRS-1 lysine-tRNA ligase 0.03 OrthoFinder output from all 47 species
Nbi_g12824 ATKRS-1 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Pir_g12935 ATKRS-1 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Sam_g15911 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
Spa_g26450 ATKRS-1 EC_6.1 ligase forming carbon-oxygen bond & original... 0.06 OrthoFinder output from all 47 species
Zm00001e004913_P001 ATKRS-1, Zm00001e004913 lysine-tRNA ligase 0.04 OrthoFinder output from all 47 species
Zm00001e012475_P001 ATKRS-1, Zm00001e012475 lysine-tRNA ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
InterPro domains Description Start Stop
IPR004365 NA-bd_OB_tRNA 130 211
IPR004364 Aa-tRNA-synt_II 254 603
No external refs found!