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  5. Dde_g16444

Dde_g16444 (ATPRP40C, PRP40C)


Aliases : ATPRP40C, PRP40C

Description : pre-mRNA-processing protein *(PRP40C) & original description: none


Gene families : OG0006310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006310_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g16444

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00102340 ATPRP40C,... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Aob_g04487 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Ceric.13G036100.1 ATPRP40C,... pre-mRNA-processing protein *(PRP40C) & original... 0.04 OrthoFinder output from all 47 species
Dac_g07036 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01010209001 ATPRP40C, PRP40C RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
LOC_Os10g34380.1 ATPRP40C,... pre-mRNA-processing protein (PRP40C) 0.04 OrthoFinder output from all 47 species
Len_g09020 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.06 OrthoFinder output from all 47 species
Sam_g10525 No alias pre-mRNA-processing protein *(PRP40C) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e012643_P002 ATPRP40C,... pre-mRNA-processing protein (PRP40C) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003989 acetyl-CoA carboxylase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016421 CoA carboxylase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR001202 WW_dom 556 581
IPR002713 FF_domain 765 813
IPR002713 FF_domain 832 880
IPR002713 FF_domain 901 948
No external refs found!