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  5. Dde_g13080

Dde_g13080


Description : RNA editing factor *(PDM2) & original description: none


Gene families : OG0007769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007769_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g13080

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00136p00085920 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g10910,... 0.07 OrthoFinder output from all 47 species
Adi_g042744 No alias RNA editing factor *(PDM2) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g083413 No alias RNA editing factor *(PDM2) & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g25084 No alias RNA editing factor *(PDM2) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g17655 No alias RNA editing factor *(PDM2) & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g00767 No alias RNA editing factor *(PDM2) & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene04186.t1 Aspi01Gene04186 RNA editing factor *(PDM2) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g02683 No alias RNA editing factor *(PDM2) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.11G067700.1 Ceric.11G067700 RNA editing factor *(PDM2) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g16063 No alias RNA editing factor *(PDM2) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05612 No alias RNA editing factor *(PDM2) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11807 No alias RNA editing factor *(PDM2) & original description: none 0.08 OrthoFinder output from all 47 species
LOC_Os01g37870.4 LOC_Os01g37870 Pentatricopeptide repeat-containing protein At1g10910,... 0.03 OrthoFinder output from all 47 species
Nbi_g08999 No alias RNA editing factor *(PDM2) & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g10589 No alias RNA editing factor *(PDM2) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g36505 No alias RNA editing factor *(PDM2) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g040260.2.1 Solyc11g040260 Pentatricopeptide repeat-containing protein At1g10910,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 597 618
IPR033443 PPR_long 255 398
IPR033443 PPR_long 501 590
IPR002885 Pentatricopeptide_repeat 413 462
No external refs found!