Description : nuclear-encoded organellar RNA polymerase *(NEP) & original description: none
Gene families : OG0002420 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002420_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT5G15700 | No alias | DNA/RNA polymerases superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
Adi_g012210 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.02 | OrthoFinder output from all 47 species | |
Adi_g073918 | MGP3 | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.04 | OrthoFinder output from all 47 species | |
Adi_g111210 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.03 | OrthoFinder output from all 47 species | |
Aev_g06151 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.03 | OrthoFinder output from all 47 species | |
Als_g05752 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g19093 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0306.g063951 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g37255 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.05 | OrthoFinder output from all 47 species | |
Cba_g72236 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.05G056000.1 | Ceric.05G056000 | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.06 | OrthoFinder output from all 47 species | |
Dac_g06640 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.05 | OrthoFinder output from all 47 species | |
Dcu_g48771 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01036518001 | No alias | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.02 | OrthoFinder output from all 47 species | |
Gb_02899 | MGP3 | nuclear-encoded organellar RNA polymerase (NEP) | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os09g07120.1 | LOC_Os09g07120 | nuclear-encoded organellar RNA polymerase (NEP) | 0.02 | OrthoFinder output from all 47 species | |
Lfl_g09946 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g35363 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.04 | OrthoFinder output from all 47 species | |
Mp3g02090.1 | No alias | nuclear-encoded organellar RNA polymerase (NEP) | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0035.g011471 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0040.g012306 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g51936 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.02 | OrthoFinder output from all 47 species | |
Solyc05g010660.4.1 | MGP3, Solyc05g010660 | nuclear-encoded organellar RNA polymerase (NEP) | 0.02 | OrthoFinder output from all 47 species | |
Spa_g10286 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.07 | OrthoFinder output from all 47 species | |
Tin_g26905 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e035572_P001 | MGP3, Zm00001e035572 | nuclear-encoded organellar RNA polymerase (NEP) | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e037650_P001 | PDE319, SCA3,... | nuclear-encoded organellar RNA polymerase (NEP) | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
MF | GO:0003674 | molecular_function | IEP | HCCA |
MF | GO:0003824 | catalytic activity | IEP | HCCA |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
MF | GO:0005525 | GTP binding | IEP | HCCA |
CC | GO:0005643 | nuclear pore | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006913 | nucleocytoplasmic transport | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
MF | GO:0016787 | hydrolase activity | IEP | HCCA |
MF | GO:0016874 | ligase activity | IEP | HCCA |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
MF | GO:0017056 | structural constituent of nuclear pore | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
MF | GO:0031072 | heat shock protein binding | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
BP | GO:0043038 | amino acid activation | IEP | HCCA |
BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
MF | GO:0051082 | unfolded protein binding | IEP | HCCA |
BP | GO:0051169 | nuclear transport | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR029262 | RPOL_N | 380 | 697 |
No external refs found! |