1. Home
  2. Species
  3. Davallia denticulata
  4. Sequence
  5. Dde_g07533

Dde_g07533 (ATRNL, AtRLG1, RNL)


Aliases : ATRNL, AtRLG1, RNL

Description : multifunctional tRNA ligase *(RLG1) & original description: none


Gene families : OG0002159 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002159_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g07533
Cluster HCCA: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene09451.t1 ATRNL, AtRLG1,... multifunctional tRNA ligase *(RLG1) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0072.g036985 ATRNL, AtRLG1, RNL multifunctional tRNA ligase *(RLG1) & original... 0.03 OrthoFinder output from all 47 species
Cba_g17689 ATRNL, AtRLG1, RNL multifunctional tRNA ligase *(RLG1) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.19G059600.1 ATRNL, AtRLG1,... multifunctional tRNA ligase *(RLG1) & original... 0.05 OrthoFinder output from all 47 species
Ceric.19G059900.1 ATRNL, AtRLG1,... multifunctional tRNA ligase *(RLG1) & original... 0.04 OrthoFinder output from all 47 species
Len_g09028 ATRNL, AtRLG1, RNL multifunctional tRNA ligase *(RLG1) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007535 ATRNL, AtRLG1, RNL multifunctional tRNA ligase *(RLG1) & original... 0.03 OrthoFinder output from all 47 species
Sam_g12368 No alias multifunctional tRNA ligase *(RLG1) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15639 No alias multifunctional tRNA ligase *(RLG1) & original description: none 0.03 OrthoFinder output from all 47 species
Smo186974 ATRNL, AtRLG1, RNL tRNA ligase 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005666 RNA polymerase III complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006383 transcription by RNA polymerase III IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!