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  5. Dde_g05886

Dde_g05886


Description : subunit beta of phenylalanine-tRNA ligase complex & original description: none


Gene families : OG0005200 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005200_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g05886

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00195200 evm_27.TU.AmTr_v1... Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 OrthoFinder output from all 47 species
AT1G72550 No alias tRNA synthetase beta subunit family protein 0.02 OrthoFinder output from all 47 species
MA_492000g0010 No alias Phenylalanine--tRNA ligase beta subunit, cytoplasmic... 0.02 OrthoFinder output from all 47 species
Mp8g07720.1 No alias subunit beta of phenylalanine-tRNA ligase complex 0.01 OrthoFinder output from all 47 species
Spa_g30088 No alias subunit beta of phenylalanine-tRNA ligase complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e029739_P002 Zm00001e029739 subunit beta of phenylalanine-tRNA ligase complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004826 phenylalanine-tRNA ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005147 tRNA_synthase_B5-dom 308 377
IPR005146 B3/B4_tRNA-bd 119 280
IPR041616 PheRS_beta_core 380 590
IPR040659 PhetRS_B1 1 89
No external refs found!