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  5. Lfl_g10480

Lfl_g10480


Description : E3 ubiquitin ligase *(SINA) & original description: none


Gene families : OG0000462 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000462_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g10480

Target Alias Description ECC score Gene Family Method Actions
Aob_g08890 SINAT2 E3 ubiquitin ligase *(SINA) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06921 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os06g20610.1 LOC_Os06g20610 E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp3g07210.1 No alias SINA-class E3 ligase 0.03 OrthoFinder output from all 47 species
Pnu_g08790 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23915 SINAT2 E3 ubiquitin ligase *(SINA) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g09486 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e017793_P002 Zm00001e017793 SINA-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e024744_P002 Zm00001e024744 SINA-class E3 ligase 0.04 OrthoFinder output from all 47 species
Zm00001e027144_P001 Zm00001e027144 SINA-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e031318_P001 Zm00001e031318 SINA-class E3 ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEA Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
BP GO:0007275 multicellular organism development IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR018121 7-in-absentia-prot_TRAF-dom 152 351
No external refs found!