Aop_g18177

Description : component *(cS23) of small plastid ribosomal-subunit proteome & original description: none

Gene families : OG0003343 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003343_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g18177
Cluster	HCCA: Cluster_45

Target	Alias	Description	ECC score	Gene Family Method
Adi_g023800	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Adi_g086977	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ala_g09246	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Als_g28969	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Cba_g17074	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Cba_g68856	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ceric.23G039300.1	Ceric.23G039300	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Cre02.g083950	No alias	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
Dac_g02540	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Dde_g08494	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Len_g12700	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Len_g56473	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Msp_g48742	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Nbi_g11760	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Ore_g26894	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ppi_g18636	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sam_g39979	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Solyc05g009570.3.1	Solyc05g009570	component psPSRP3 of small ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species
Tin_g11701	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Tin_g12630	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Zm00001e007903_P001	Zm00001e007903	component psPSRP3 of small ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006924	Ribosomal_PSRP3/Ycf65	769	815

External Links

No external refs found!

Aop_g18177

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation