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  5. Aop_g16173

Aop_g16173 (RNR1, ATMTRNASEII, EMB2730)


Aliases : RNR1, ATMTRNASEII, EMB2730

Description : exoribonuclease *(RNase R) & original description: none


Gene families : OG0003116 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003116_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g16173

Target Alias Description ECC score Gene Family Method Actions
Adi_g010538 RNR1,... exoribonuclease *(RNase R) & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g01584 RNR1,... exoribonuclease *(RNase R) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06373 RNR1,... exoribonuclease *(RNase R) & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0076.g037820 RNR1,... exoribonuclease *(RNase R) & original description: CDS=121-2559 0.08 OrthoFinder output from all 47 species
Ceric.12G013800.1 RNR1,... exoribonuclease *(RNase R) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.16G035800.1 RNR1,... exoribonuclease *(RNase R) & original description:... 0.08 OrthoFinder output from all 47 species
Cre12.g500650 RNR1,... RNA processing.organelle machineries.ribonuclease... 0.03 OrthoFinder output from all 47 species
GSVIVT01034161001 RNR1,... RNA processing.organelle machineries.ribonuclease... 0.04 OrthoFinder output from all 47 species
LOC_Os01g62440.1 RNR1,... exoribonuclease (RNase R) 0.06 OrthoFinder output from all 47 species
Len_g24705 RNR1,... exoribonuclease *(RNase R) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02157 RNR1,... exoribonuclease *(RNase R) & original description: none 0.08 OrthoFinder output from all 47 species
Mp3g07060.1 RNR1,... exoribonuclease (RNase R) 0.03 OrthoFinder output from all 47 species
Nbi_g16036 RNR1,... exoribonuclease *(RNase R) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25156 RNR1,... exoribonuclease *(RNase R) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g11910 RNR1,... exoribonuclease *(RNase R) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g010870.4.1 RNR1,... exoribonuclease (RNase R) 0.04 OrthoFinder output from all 47 species
Spa_g26797 RNR1,... exoribonuclease *(RNase R) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004540 ribonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR001900 RNase_II/R 360 656
No external refs found!