Lfl_g10031 (TGH)

Aliases : TGH

Description : component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex & original description: none

Gene families : OG0004570 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004570_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g10031

Target	Alias	Description	ECC score	Gene Family Method
Adi_g112661	TGH	component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex...	0.03	OrthoFinder output from all 47 species
Aev_g35036	TGH	component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex...	0.02	OrthoFinder output from all 47 species
Ala_g12092	TGH	component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex...	0.05	OrthoFinder output from all 47 species
Aop_g20730	TGH	component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex...	0.03	OrthoFinder output from all 47 species
Azfi_s0018.g014861	TGH	component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex...	0.03	OrthoFinder output from all 47 species
Ceric.03G041500.1	TGH, Ceric.03G041500	component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020848.29	TGH	RNA biosynthesis.RNA polymerase II-dependent...	0.01	OrthoFinder output from all 47 species
Cre13.g568700	TGH	RNA biosynthesis.RNA polymerase II-dependent...	0.01	OrthoFinder output from all 47 species
Dac_g20945	TGH	component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex...	0.03	OrthoFinder output from all 47 species
Dcu_g15206	TGH	component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex...	0.06	OrthoFinder output from all 47 species
Ehy_g25769	TGH	component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex...	0.02	OrthoFinder output from all 47 species
GSVIVT01008206001	TGH	RNA biosynthesis.RNA polymerase II-dependent...	0.03	OrthoFinder output from all 47 species
LOC_Os06g29400.1	TGH, LOC_Os06g29400	component TOUGH of DCL1-HYL1 miRNA biogenesis complex	0.04	OrthoFinder output from all 47 species
Mp1g06200.1	TGH	component TOUGH of DCL1-HYL1 miRNA biogenesis complex	0.06	OrthoFinder output from all 47 species
Ore_g44868	TGH	component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex...	0.03	OrthoFinder output from all 47 species
Pir_g10423	TGH	component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex...	0.03	OrthoFinder output from all 47 species
Smo80512	TGH	RNA biosynthesis.RNA polymerase II-dependent...	0.07	OrthoFinder output from all 47 species
Spa_g12253	TGH	component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex...	0.03	OrthoFinder output from all 47 species
Tin_g11519	TGH	component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex...	0.04	OrthoFinder output from all 47 species
Zm00001e036975_P003	TGH, Zm00001e036975	component TOUGH of DCL1-HYL1 miRNA biogenesis complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003876	AMP deaminase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006188	IMP biosynthetic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009126	purine nucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009127	purine nucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	HCCA
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	HCCA
MF	GO:0019239	deaminase activity	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
BP	GO:0032261	purine nucleotide salvage	IEP	HCCA
BP	GO:0032264	IMP salvage	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0043094	cellular metabolic compound salvage	IEP	HCCA
BP	GO:0043101	purine-containing compound salvage	IEP	HCCA
BP	GO:0043173	nucleotide salvage	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0046040	IMP metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0047623	adenosine-phosphate deaminase activity	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0106380	purine ribonucleotide salvage	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000061	Surp	410	457
IPR011666	DUF1604	43	116

External Links

No external refs found!

Lfl_g10031 (TGH)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation