1. Home
  2. Species
  3. Lygodium flexuosum
  4. Sequence
  5. Lfl_g09902

Lfl_g09902


Description : not classified & original description: none


Gene families : OG0001489 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001489_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g09902
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00148p00040560 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT3G45190 No alias SIT4 phosphatase-associated family protein 0.04 OrthoFinder output from all 47 species
Ala_g23509 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g15062 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g60684 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g61175 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g12504 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g10908 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g14590 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene07261.t1 Aspi01Gene07261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene10729.t2 Aspi01Gene10729 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0110.g045462 No alias not classified & original description: CDS=910-3219 0.03 OrthoFinder output from all 47 species
Azfi_s0292.g063371 No alias not classified & original description: CDS=345-3257 0.04 OrthoFinder output from all 47 species
Cba_g11877 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g63070 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.29G048200.1 Ceric.29G048200 not classified & original description: pacid=50625778... 0.07 OrthoFinder output from all 47 species
Cre12.g484150 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g11195 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Dde_g21510 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01021620001 No alias No description available 0.07 OrthoFinder output from all 47 species
GSVIVT01025195001 No alias No description available 0.04 OrthoFinder output from all 47 species
LOC_Os01g40340.1 LOC_Os01g40340 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
LOC_Os05g51490.1 LOC_Os05g51490 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Len_g22543 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Msp_g21329 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06306 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g06805 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g04434 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g19157 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25157 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g52268 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Smo419685 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc06g011665.1.1 Solyc06g011665 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc11g069490.3.1 Solyc11g069490 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Spa_g31041 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g48080 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006899_P001 Zm00001e006899 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e020549_P002 Zm00001e020549 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Zm00001e027801_P001 Zm00001e027801 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e032567_P002 Zm00001e032567 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0019903 protein phosphatase binding IEA Interproscan
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007587 SAPS 354 487
IPR007587 SAPS 131 352
No external refs found!