1. Home
  2. Species
  3. Amblovenatum opulentum
  4. Sequence
  5. Aop_g12683

Aop_g12683 (EMB1265, ATCPSF100,...)


Aliases : EMB1265, ATCPSF100, CPSF100, ESP5

Description : component *(CPSF100/Ydh1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex & original description: none


Gene families : OG0005611 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005611_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g12683

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00247750 EMB1265,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.04 OrthoFinder output from all 47 species
Adi_g012206 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Ceric.09G061000.1 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Mp3g01860.1 EMB1265,... component CPSF100/Ydh1 of Cleavage and Polyadenylation... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004813 alanine-tRNA ligase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006419 alanyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR022712 Beta_Casp 243 366
IPR011108 RMMBL 541 590
IPR025069 Cpsf2_C 657 738
IPR001279 Metallo-B-lactamas 22 198
No external refs found!