Aop_g09012 (GCT)

Aliases : GCT

Description : component *(MED13) of kinase module of MEDIATOR transcription co-activator complex & original description: none

Gene families : OG0005581 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005581_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g09012

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00198p00028070	GCT,...	RNA biosynthesis.RNA polymerase II-dependent...	0.02	OrthoFinder output from all 47 species
AT1G55325	GCT	RNA polymerase II transcription mediators	0.02	OrthoFinder output from all 47 species
Ala_g37172	GCT	component *(MED13) of kinase module of MEDIATOR...	0.05	OrthoFinder output from all 47 species
Azfi_s0015.g014125	GCT	component *(MED13) of kinase module of MEDIATOR...	0.03	OrthoFinder output from all 47 species
Ceric.39G047500.1	GCT, Ceric.39G047500	component *(MED13) of kinase module of MEDIATOR...	0.03	OrthoFinder output from all 47 species
GSVIVT01025465001	GCT	RNA biosynthesis.RNA polymerase II-dependent...	0.04	OrthoFinder output from all 47 species
Gb_30550	GCT	component MED13 of kinase module of MEDIATOR...	0.05	OrthoFinder output from all 47 species
LOC_Os05g37500.1	GCT, LOC_Os05g37500	component MED13 of kinase module of MEDIATOR...	0.05	OrthoFinder output from all 47 species
Mp1g01940.1	GCT	component MED13 of kinase module of MEDIATOR...	0.04	OrthoFinder output from all 47 species
Msp_g14816	GCT	component *(MED13) of kinase module of MEDIATOR...	0.04	OrthoFinder output from all 47 species
Ore_g36609	GCT	component *(MED13) of kinase module of MEDIATOR...	0.04	OrthoFinder output from all 47 species
Pnu_g07521	GCT	component *(MED13) of kinase module of MEDIATOR...	0.03	OrthoFinder output from all 47 species
Sam_g17992	No alias	component *(MED13) of kinase module of MEDIATOR...	0.03	OrthoFinder output from all 47 species
Smo447924	GCT	RNA biosynthesis.RNA polymerase II-dependent...	0.02	OrthoFinder output from all 47 species
Solyc04g039950.4.1	GCT, Solyc04g039950	component MED13 of kinase module of MEDIATOR...	0.04	OrthoFinder output from all 47 species
Tin_g13284	GCT	component *(MED13) of kinase module of MEDIATOR...	0.02	OrthoFinder output from all 47 species
Zm00001e036721_P002	GCT, Zm00001e036721	component MED13 of kinase module of MEDIATOR...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003712	transcription coregulator activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0016592	mediator complex	IEA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016746	acyltransferase activity	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	HCCA
MF	GO:0031267	small GTPase binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
CC	GO:0046540	U4/U6 x U5 tri-snRNP complex	IEP	HCCA
MF	GO:0051020	GTPase binding	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0097525	spliceosomal snRNP complex	IEP	HCCA
CC	GO:0097526	spliceosomal tri-snRNP complex	IEP	HCCA
CC	GO:0120114	Sm-like protein family complex	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR009401	Med13_C	1609	1705
IPR041285	MID_MedPIWI	1213	1321
IPR041285	MID_MedPIWI	1331	1450

External Links

No external refs found!

Aop_g09012 (GCT)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation