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  5. Aop_g06644

Aop_g06644 (emb2004)


Aliases : emb2004

Description : not classified & original description: none


Gene families : OG0006225 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006225_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g06644

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00132040 emb2004,... RAN GTPase-activating protein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g059435 emb2004 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g05323 emb2004 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01877 emb2004 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g15959 emb2004 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01020179001 emb2004 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os06g13050.1 LOC_Os06g13050 Peroxidase 65 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp4g21830.1 emb2004 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012772 emb2004 not classified & original description: CDS=2191-2943 0.02 OrthoFinder output from all 47 species
Solyc05g006170.4.1 emb2004, Solyc05g006170 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e036062_P001 emb2004, Zm00001e036062 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004814 arginine-tRNA ligase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006420 arginyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 423 440
IPR001611 Leu-rich_rpt 536 558
IPR001611 Leu-rich_rpt 482 501
IPR001611 Leu-rich_rpt 506 528
IPR001611 Leu-rich_rpt 338 360
IPR001611 Leu-rich_rpt 370 388
IPR001611 Leu-rich_rpt 225 248
IPR001611 Leu-rich_rpt 452 470
IPR001611 Leu-rich_rpt 398 417
IPR001611 Leu-rich_rpt 257 276
No external refs found!