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  5. Aop_g06536

Aop_g06536


Description : ribosome biogenesis factor *(CRASS) & original description: none


Gene families : OG0007938 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007938_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g06536
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00224760 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AT5G14910 No alias Heavy metal transport/detoxification superfamily protein 0.07 OrthoFinder output from all 47 species
Aev_g02821 No alias ribosome biogenesis factor *(CRASS) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g13367 No alias ribosome biogenesis factor *(CRASS) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0250.g060247 No alias ribosome biogenesis factor *(CRASS) & original... 0.04 OrthoFinder output from all 47 species
Ceric.01G033000.1 Ceric.01G033000 ribosome biogenesis factor *(CRASS) & original... 0.04 OrthoFinder output from all 47 species
Dac_g12212 No alias ribosome biogenesis factor *(CRASS) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g36209 No alias ribosome biogenesis factor *(CRASS) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11519 No alias ribosome biogenesis factor *(CRASS) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04247 No alias ribosome biogenesis factor *(CRASS) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05290 No alias ribosome biogenesis factor *(CRASS) & original description: none 0.03 OrthoFinder output from all 47 species
Gb_22864 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os05g27100.1 LOC_Os05g27100 ribosome biogenesis factor (CRASS) 0.05 OrthoFinder output from all 47 species
Len_g14822 No alias ribosome biogenesis factor *(CRASS) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g37391 No alias ribosome biogenesis factor *(CRASS) & original description: none 0.03 OrthoFinder output from all 47 species
Mp6g04290.1 No alias ribosome biogenesis factor (CRASS) 0.06 OrthoFinder output from all 47 species
Ore_g05841 No alias ribosome biogenesis factor *(CRASS) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02964 No alias ribosome biogenesis factor *(CRASS) & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c1_25290V3.1 Pp3c1_25290 Heavy metal transport/detoxification superfamily protein 0.02 OrthoFinder output from all 47 species
Ppi_g00577 No alias ribosome biogenesis factor *(CRASS) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13302 No alias ribosome biogenesis factor *(CRASS) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13303 No alias ribosome biogenesis factor *(CRASS) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g087150.3.1 Solyc02g087150 ribosome biogenesis factor (CRASS) 0.04 OrthoFinder output from all 47 species
Spa_g10440 No alias ribosome biogenesis factor *(CRASS) & original description: none 0.08 OrthoFinder output from all 47 species
Zm00001e031534_P001 Zm00001e031534 ribosome biogenesis factor (CRASS) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA

No InterPro domains available for this sequence

No external refs found!