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  5. Aop_g05856

Aop_g05856


Description : substrate adaptor *(HTD1/DWD1) of CUL4-based E3 ubiquitin ligase complex & original description: none


Gene families : OG0004386 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004386_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g05856
Cluster HCCA: Cluster_283

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00164390 evm_27.TU.AmTr_v1... Histone-binding protein MSI1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Aev_g03870 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.04 OrthoFinder output from all 47 species
Als_g04318 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.02 OrthoFinder output from all 47 species
Azfi_s0043.g026948 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001493.9 No alias No description available 0.03 OrthoFinder output from all 47 species
Cre17.g724850 No alias WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01015210001 No alias WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
MA_10425957g0010 No alias Histone-binding protein MSI1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp4g21540.1 No alias Histone-binding protein MSI1 homolog OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Sam_g10251 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.02 OrthoFinder output from all 47 species
Solyc07g039200.4.1 Solyc07g039200 WD-40 repeat-containing protein MSI2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g11514 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.03 OrthoFinder output from all 47 species
Zm00001e020846_P004 Zm00001e020846 Histone-binding protein MSI1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e027495_P001 Zm00001e027495 WD-40 repeat-containing protein MSI4 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003689 DNA clamp loader activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005663 DNA replication factor C complex IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR022052 Histone-bd_RBBP4_N 43 110
IPR001680 WD40_repeat 309 343
IPR001680 WD40_repeat 265 299
No external refs found!