Aop_g05120 (RPL4)

Aliases : RPL4

Description : component *(uL4c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0007896 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007896_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g05120
Cluster	HCCA: Cluster_36

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00221060	RPL4,...	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
AT1G07320	RPL4	ribosomal protein L4	0.13	OrthoFinder output from all 47 species
Adi_g078975	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ala_g05983	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Als_g20889	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Aob_g13415	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Azfi_s0056.g034220	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ceric.09G057300.1	RPL4, Ceric.09G057300	component *(uL4c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Cre11.g479500	RPL4	Protein biosynthesis.organelle translation...	0.11	OrthoFinder output from all 47 species
Dac_g21787	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Dcu_g06106	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Dde_g06392	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Ehy_g02216	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
GSVIVT01024788001	RPL4	50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum	0.06	OrthoFinder output from all 47 species
Gb_03469	RPL4	component psRPL4 of large ribosomal subunit proteome	0.08	OrthoFinder output from all 47 species
LOC_Os03g15870.1	RPL4, LOC_Os03g15870	component psRPL4 of large ribosomal subunit proteome	0.11	OrthoFinder output from all 47 species
Len_g13257	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Lfl_g01030	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
MA_2315568g0010	RPL4	50S ribosomal protein L4, chloroplastic OS=Nicotiana...	0.04	OrthoFinder output from all 47 species
MA_9845329g0010	RPL4	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp1g18940.1	RPL4	component psRPL4 of large ribosomal subunit proteome	0.13	OrthoFinder output from all 47 species
Msp_g19825	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Nbi_g14226	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ore_g08496	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Pir_g19924	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ppi_g15929	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Solyc07g061900.3.1	RPL4, Solyc07g061900	component psRPL4 of large ribosomal subunit proteome	0.11	OrthoFinder output from all 47 species
Spa_g08728	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Tin_g24110	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Zm00001e001165_P001	RPL4, Zm00001e001165	component psRPL4 of large ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
MF	GO:0005315	inorganic phosphate transmembrane transporter activity	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006817	phosphate ion transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0010207	photosystem II assembly	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
BP	GO:0015698	inorganic anion transport	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
MF	GO:0140359	ABC-type transporter activity	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002136	Ribosomal_L4/L1e	97	284

External Links

No external refs found!

Aop_g05120 (RPL4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation