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  5. Aop_g02872

Aop_g02872


Description : subunit delta of cargo adaptor F-subcomplex & original description: none


Gene families : OG0002181 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002181_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g02872

Target Alias Description ECC score Gene Family Method Actions
AT5G05010 No alias clathrin adaptor complexes medium subunit family protein 0.03 OrthoFinder output from all 47 species
Dcu_g11196 No alias subunit delta of cargo adaptor F-subcomplex & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01012108001 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 OrthoFinder output from all 47 species
LOC_Os01g61710.1 LOC_Os01g61710 subunit delta of cargo adaptor F-subcomplex 0.02 OrthoFinder output from all 47 species
LOC_Os05g24601.1 LOC_Os05g24601 subunit delta of cargo adaptor F-subcomplex 0.06 OrthoFinder output from all 47 species
MA_20701g0020 No alias Coatomer subunit delta-2 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Msp_g12080 No alias subunit delta of cargo adaptor F-subcomplex & original... 0.04 OrthoFinder output from all 47 species
Nbi_g11812 No alias subunit delta of cargo adaptor F-subcomplex & original... 0.03 OrthoFinder output from all 47 species
Smo172790 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.04 OrthoFinder output from all 47 species
Spa_g11906 No alias subunit delta of cargo adaptor F-subcomplex & original... 0.04 OrthoFinder output from all 47 species
Tin_g00962 No alias subunit delta of cargo adaptor F-subcomplex & original... 0.05 OrthoFinder output from all 47 species
Zm00001e018368_P003 Zm00001e018368 subunit delta of cargo adaptor F-subcomplex 0.02 OrthoFinder output from all 47 species
Zm00001e039766_P001 Zm00001e039766 subunit delta of cargo adaptor F-subcomplex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR028565 MHD 284 500
No external refs found!