Aop_g01993

Description : assembly factor involved in RuBisCo assembly *(RAF2) & original description: none

Gene families : OG0002088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002088_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g01993
Cluster	HCCA: Cluster_51

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00048p00030920	evm_27.TU.AmTr_v1...	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.02	OrthoFinder output from all 47 species
Adi_g046909	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.03	OrthoFinder output from all 47 species
Aev_g01920	No alias	EC_4.2 carbon-oxygen lyase & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g08845	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.04	OrthoFinder output from all 47 species
Ala_g12056	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g04074	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.03	OrthoFinder output from all 47 species
ChrSy.fgenesh.mRNA.86	No alias	RAF2 assembly factor involved in RuBisCo assembly	0.02	OrthoFinder output from all 47 species
Dac_g02570	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.02	OrthoFinder output from all 47 species
Dde_g33347	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.03	OrthoFinder output from all 47 species
MA_167002g0010	No alias	RAF2 assembly factor involved in RuBisCo assembly	0.02	OrthoFinder output from all 47 species
Nbi_g03969	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.05	OrthoFinder output from all 47 species
Ppi_g04239	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.03	OrthoFinder output from all 47 species
Sam_g06779	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.02	OrthoFinder output from all 47 species
Sam_g39199	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006066	alcohol metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016836	hydro-lyase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019751	polyol metabolic process	None	Extended
BP	GO:0034311	diol metabolic process	None	Extended
BP	GO:0034312	diol biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042558	pteridine-containing compound metabolic process	None	Extended
BP	GO:0042559	pteridine-containing compound biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046146	tetrahydrobiopterin metabolic process	None	Extended
BP	GO:0046165	alcohol biosynthetic process	None	Extended
BP	GO:0046173	polyol biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901617	organic hydroxy compound biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0010564	regulation of cell cycle process	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
BP	GO:0017038	protein import	IEP	HCCA
BP	GO:0032954	regulation of cytokinetic process	IEP	HCCA
BP	GO:0032955	regulation of division septum assembly	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0044087	regulation of cellular component biogenesis	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051301	cell division	IEP	HCCA
BP	GO:0051726	regulation of cell cycle	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901891	regulation of cell septum assembly	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001533	Pterin_deHydtase	121	210

External Links

No external refs found!

Aop_g01993

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation